Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02634 ATGTGGGATCTTAACGGTTCACCGTTCAAGAGAAAAGATGAAGCGTCTCAAGGATGTTCCTCGCGAAAGACATCATTAGACGAAGATGAAGGAAAAAGGGTCGGTGTTGGTATTGGTGGATCTGTTTCGAATTCTAGCTCTTCCGCTATCGTAATCGAAGAAGATTCAGAAGAAGATAACAACAAAAGCATCATGGTAAAGAAAAAAAACAGCAAGATATTTGGTTTTTCAGTGACACAAGAACATGAACAAGAGCAAGAAGAAGAAGAATCTTTAGACAGTGAAAAATTTCCCGTGACAAGGAATTTCTTTCCTATGGATCAAGAAGGTGAAAACATGGTTGTAGCATCTAGTGGTGGAAATGGAACATCTTCTTGTTCTTCTAGTTTTCCTCGTGCTCATTGGGTAGGTGTGAAATTTTGTCAATCGGAAACACTTGGAAGTGGAAAATCAATGGAAGTTTCATCTTCTTCACAACCTATGAAGAAGAGTCGTAGAGGACCAAGGTCAAGAAGTTCACAGTATAGAGGAGTTACTTTTTACAGAAGAACAGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCTATTAAGTTTAGAGGTGTTGAGGCAGACATAAACTTCAACATAGAAGATTATGAAGACGACTTGAAGCAGATGAGTAATTTGACAAAGGAAGAGTTTGTACATGTACTTCGTCGACAAAGCACTGGTTTTCCGAGAGGAAGTTCTAAATATAGAGGTGTTACATTGCACAAATGTGGAAGATGGGAGGCTCGAATGGGTCAATTTTTAGGAAAAAACTTATATTTATTCTCGTTCACTAGATATGTTTATCTGGGCTTGTTTGACACAGAGGTTGAAGCTGCAAGGGCTTATGACAAAGCAGCGATAAAATGCAATGGAAAAGAGGCTGTAACTAATTTTGAACCAAGCATATATGATAGTGAGCTTAATTCTGCAGAACCAGCAAGTAGTGGTGGTGATCATAATTTGGATTTAAGTTTGGGAAATTCAAGCTCAAAGCACATGAATAACAGTCAAGCATTTGGGAGTCACACATCAAATATTGCAAATCATGATCAATCTAATTGGCAGAATGGGGGAAACATAAACAAGCCTAAGCTTGTGAATATACTGCCAAAACCATATAATAGACCAAACAACATGGAACCATATGTAAGAGATTTGCATGGAGAGAATGAAGCATTGAGAATGCTAAGTCAAACTCATCTTCATTCTTCATCATCGAACGATATTCATCGATATGGTCCTTTTCGAGATCAATCACAAATGCTTGATAGTTTTGCACATACTCATCACCAACCAAATTTTCATTTTCCCAGCAGCAGCTACGGAAGCCGAACAACCCCTCTTCTCAAACATGGCTGCACAAAAAATGGCTTCCACACTCTCATGAGACCCTCTTGA 1494 0.3909 MWDLNGSPFKRKDEASQGCSSRKTSLDEDEGKRVGVGIGGSVSNSSSSAIVIEEDSEEDNNKSIMVKKKNSKIFGFSVTQEHEQEQEEEESLDSEKFPVTRNFFPMDQEGENMVVASSGGNGTSSCSSSFPRAHWVGVKFCQSETLGSGKSMEVSSSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKNLYLFSFTRYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFEPSIYDSELNSAEPASSGGDHNLDLSLGNSSSKHMNNSQAFGSHTSNIANHDQSNWQNGGNINKPKLVNILPKPYNRPNNMEPYVRDLHGENEALRMLSQTHLHSSSSNDIHRYGPFRDQSQMLDSFAHTHHQPNFHFPSSSYGSRTTPLLKHGCTKNGFHTLMRPS 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02634 497 ProSiteProfiles AP2/ERF domain profile. 174 230 IPR001471 GO:0003700|GO:0006355
Vifa4g02634 497 SUPERFAMILY DNA-binding domain 265 333 IPR016177 GO:0003677
Vifa4g02634 497 SMART rav1_2 266 337 IPR001471 GO:0003700|GO:0006355
Vifa4g02634 497 SMART rav1_2 174 236 IPR001471 GO:0003700|GO:0006355
Vifa4g02634 497 MobiDBLite consensus disorder prediction 148 163 - -
Vifa4g02634 497 SUPERFAMILY DNA-binding domain 173 231 IPR016177 GO:0003677
Vifa4g02634 497 MobiDBLite consensus disorder prediction 77 96 - -
Vifa4g02634 497 CDD AP2 174 231 IPR001471 GO:0003700|GO:0006355
Vifa4g02634 497 Gene3D AP2/ERF domain 173 232 IPR036955 GO:0003700|GO:0006355
Vifa4g02634 497 Gene3D AP2/ERF domain 265 332 IPR036955 GO:0003700|GO:0006355
Vifa4g02634 497 MobiDBLite consensus disorder prediction 1 34 - -
Vifa4g02634 497 MobiDBLite consensus disorder prediction 1 66 - -
Vifa4g02634 497 FunFam AP2-like ethylene-responsive transcription factor 173 232 - -
Vifa4g02634 497 CDD AP2 265 333 IPR001471 GO:0003700|GO:0006355
Vifa4g02634 497 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 89 422 - -
Vifa4g02634 497 PRINTS Ethylene responsive element binding protein signature 313 333 IPR001471 GO:0003700|GO:0006355
Vifa4g02634 497 PRINTS Ethylene responsive element binding protein signature 267 278 IPR001471 GO:0003700|GO:0006355
Vifa4g02634 497 ProSiteProfiles AP2/ERF domain profile. 266 331 IPR001471 GO:0003700|GO:0006355
Vifa4g02634 497 Pfam AP2 domain 265 322 IPR001471 GO:0003700|GO:0006355
Vifa4g02634 497 Pfam AP2 domain 174 222 IPR001471 GO:0003700|GO:0006355
Vifa4g02634 497 MobiDBLite consensus disorder prediction 148 175 - -
Vifa4g02634 497 MobiDBLite consensus disorder prediction 339 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02634 Vifa-Chr4 807822161 807824677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02634 1 388 AP2-EREBP Transcription Factor Family AT4G36920 59.169 5.38e-124 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vifa4g02634 AP2 9.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02634 K09284 - gmx:100792442 603.594