Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02633 ATGTGGGATCTTAACGGTTCACCGTTCAAGAGAAAAGATGAAGCGTCTCAAGGATGTTCCTCGCGAAAGACATCATTAGACGAAGATGAAGGAAAAAGGGTCGGTGTTGGTATTGGTGGATCTGTTTCGAATTCTAGCTCTTCCGCTATCGTAATCGAAGAAGATTCAGAAGAAGATAACAACAAAAGCATCATGGTAAAGAAAAAAAACAGCAAGATATTTGGTTTTTCAGTGACACAAGAACATGAACAAGAGCAAGAAGAAGAAGAATCTTTAGACAGTGAAAAATTTCCCGTGACAAGGAATTTCTTTCCTATGGATCAAGAAGGTGAAAACATGGTTGTAGCATCTAGTGGTGGAAATGGAACATCTTCTTGTTCTTCTAGTTTTCCTCGTGCTCATTGGGTAGGTGTGAAATTTTGTCAATCGGAAACACTTGGAAGTGGAAAATCAATGGAAGTTTCATCTTCTTCACAACCTATGAAGAAGAGTCGTAGAGGACCAAGGTCAAGAAGTTCACAGTATAGAGGAGTTACTTTTTACAGAAGAACAGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCTATTAAGTTTAGAGGTGTTGAGGCAGACATAAACTTCAACATAGAAGATTATGAAGACGACTTGAAGCAGATGAGTAATTTGACAAAGGAAGAGTTTGTACATGTACTTCGTCGACAAAGCACTGGTTTTCCGAGAGGAAGTTCTAAATATAGAGGTGTTACATTGCACAAATGTGGAAGATGGGAGGCTCGAATGGGTCAATTTTTAGGAAAAAAATATGTTTATCTGGGCTTGTTTGACACAGAGGTTGAAGCTGCAAGGGCTTATGACAAAGCAGCGATAAAATGCAATGGAAAAGAGGCTGTAACTAATTTTGAACCAAGCATATATGATAGTGAGCTTAATTCTGCAGAACCAGCAAGTAGTGGTGGTGATCATAATTTGGATTTAAGTTTGGGAAATTCAAGCTCAAAGCACATGAATAACAGTCAAGCATTTGGGAGTCACACATCAAATATTGCAAATCATGATCAATCTAATTGGCAGAATGGGGGAAACATAAACAAGCCTAAGCTTGTGAATATACTGCCAAAACCATATAATAGACCAAACAACATGGAACCATATGTAAGAGATTTGCATGGAGAGAATGAAGCATTGAGAATGCTAAGTCAAACTCATCTTCATTCTTCATCATCGAACGATATTCATCGATATGGTCCTTTTCGAGATCAATCACAAATGCTTGATAGTTTTGCACATACTCATCACCAACCAAATTTTCATTTTCCCAGCAGCAGCTACGGAAGCCGAACAACCCCTCTTCTCAAACATGGCTGCACAAAAAATGGCTTCCACACTCTCATGAGACCCTCTTGA 1470 0.3925 MWDLNGSPFKRKDEASQGCSSRKTSLDEDEGKRVGVGIGGSVSNSSSSAIVIEEDSEEDNNKSIMVKKKNSKIFGFSVTQEHEQEQEEEESLDSEKFPVTRNFFPMDQEGENMVVASSGGNGTSSCSSSFPRAHWVGVKFCQSETLGSGKSMEVSSSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFEPSIYDSELNSAEPASSGGDHNLDLSLGNSSSKHMNNSQAFGSHTSNIANHDQSNWQNGGNINKPKLVNILPKPYNRPNNMEPYVRDLHGENEALRMLSQTHLHSSSSNDIHRYGPFRDQSQMLDSFAHTHHQPNFHFPSSSYGSRTTPLLKHGCTKNGFHTLMRPS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02633 489 PRINTS Ethylene responsive element binding protein signature 305 325 IPR001471 GO:0003700|GO:0006355
Vifa4g02633 489 PRINTS Ethylene responsive element binding protein signature 267 278 IPR001471 GO:0003700|GO:0006355
Vifa4g02633 489 ProSiteProfiles AP2/ERF domain profile. 174 230 IPR001471 GO:0003700|GO:0006355
Vifa4g02633 489 SUPERFAMILY DNA-binding domain 265 325 IPR016177 GO:0003677
Vifa4g02633 489 MobiDBLite consensus disorder prediction 148 163 - -
Vifa4g02633 489 SUPERFAMILY DNA-binding domain 173 231 IPR016177 GO:0003677
Vifa4g02633 489 MobiDBLite consensus disorder prediction 77 96 - -
Vifa4g02633 489 CDD AP2 174 231 IPR001471 GO:0003700|GO:0006355
Vifa4g02633 489 MobiDBLite consensus disorder prediction 331 384 - -
Vifa4g02633 489 FunFam AP2-like ethylene-responsive transcription factor 265 325 - -
Vifa4g02633 489 MobiDBLite consensus disorder prediction 1 66 - -
Vifa4g02633 489 MobiDBLite consensus disorder prediction 1 34 - -
Vifa4g02633 489 Gene3D AP2/ERF domain 265 324 IPR036955 GO:0003700|GO:0006355
Vifa4g02633 489 Gene3D AP2/ERF domain 173 232 IPR036955 GO:0003700|GO:0006355
Vifa4g02633 489 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 89 414 - -
Vifa4g02633 489 FunFam AP2-like ethylene-responsive transcription factor 173 232 - -
Vifa4g02633 489 MobiDBLite consensus disorder prediction 148 175 - -
Vifa4g02633 489 ProSiteProfiles AP2/ERF domain profile. 266 323 IPR001471 GO:0003700|GO:0006355
Vifa4g02633 489 CDD AP2 265 325 IPR001471 GO:0003700|GO:0006355
Vifa4g02633 489 Pfam AP2 domain 265 314 IPR001471 GO:0003700|GO:0006355
Vifa4g02633 489 Pfam AP2 domain 174 222 IPR001471 GO:0003700|GO:0006355
Vifa4g02633 489 SMART rav1_2 266 329 IPR001471 GO:0003700|GO:0006355
Vifa4g02633 489 SMART rav1_2 174 236 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02633 Vifa-Chr4 807822161 807824677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02633 1 380 AP2-EREBP Transcription Factor Family AT4G36920 60.599 1.56e-127 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa4g02633 AP2 8.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02633 K09284 - gmx:100792442 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02633 4 807822161 807824677 Vifa4g02633 4 807822161 807824677 ECH
Vifa1g07236 1 1118130187 1118132864 Vifa4g02633 4 807822161 807824677 PCT