Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02623 ATGGCTATCAACAATGAAGAGAAACAAGAAATCAAACCCATTGGACATAATGAACTTGCTCACAAGAGTCTCCTTCAAAGTGATGCACTTTATCAGTATATACTTGAGACGAGTGTGTTTCCAAGAGAGCACCCATGTTTGAAGGAGCTTCGTGAGATGACAGAAAAACATCCTTGGAACCTTATGGCTACACCTGCCGATGAAGGACAACTTTTAAGCATGTTGATTAAGCTCATCAATGCAAAAAATACATTGGAAATTGGTGTCTTCACTGGTTACTCTCTCCTTTCCACTGCTCTTGCTCTTCCTTCTGATGGAAAGATATTGGCTTTGGACGTGAGTCGTGAATACTATGAGCTGGGATTGCCTATAATTGAAAAGTCTGGAGTTGTTGACAAGATTGAGTTCAGAGAAGGACCTGCTCTACCTGTTCTAGATGAACTTATTCAAGACGAAAATAACAATGGGGCATTTGATTTTGTTTTTGTGGATGCTGACAAAGATAATTACTTAAACTATCACAAGAGGGTAATTGAGCTTGTGAAAGTTGGAGGATTGATCGGGTACGACAACACCTTATGGAGTGGATCTGTGGCAGCTTCATCTAATGCACCTATGCTGGATTATATTAAGCGTTTACGTGGTTATGTGATTGAGCTTAACAAATATCTTGCCCATGATTCAAGGATTGAGATTTGTCAGCTTCCAGTGGGTGATGGAATTACCTTATGTCGGCGCATCAACTGA 747 0.4029 MAINNEEKQEIKPIGHNELAHKSLLQSDALYQYILETSVFPREHPCLKELREMTEKHPWNLMATPADEGQLLSMLIKLINAKNTLEIGVFTGYSLLSTALALPSDGKILALDVSREYYELGLPIIEKSGVVDKIEFREGPALPVLDELIQDENNNGAFDFVFVDADKDNYLNYHKRVIELVKVGGLIGYDNTLWSGSVAASSNAPMLDYIKRLRGYVIELNKYLAHDSRIEICQLPVGDGITLCRRIN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02623 248 CDD AdoMet_MTases 85 187 - -
Vifa4g02623 248 Gene3D Vaccinia Virus protein VP39 14 248 IPR029063 -
Vifa4g02623 248 Pfam O-methyltransferase 37 247 IPR002935 GO:0008171
Vifa4g02623 248 PANTHER O-METHYLTRANSFERASE-RELATED 20 247 - -
Vifa4g02623 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 246 IPR029063 -
Vifa4g02623 248 FunFam Caffeoyl-CoA O-methyltransferase 1 16 248 - -
Vifa4g02623 248 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 23 247 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02623 Vifa-Chr4 805205062 805207865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02623 4 248 Monolignol Biosynthesis Gene Families AT4G34050 71.020 7.31e-134 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02623 K00588 - gmx:100799303 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02623 4 805205062 805207865 Vifa4g02623 4 805205062 805207865 ECH