Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02618 ATGGATTGGGTACGAGGAGAATCAGTTGGGAGAGGAACCTTTGCTACTGTTCATTTAGTCATACCCAAAGCTACTTCAAATTACACTATATTTCCTTCTCCGACAGCAGTCAAAACATCCGAGGTTTCAACCTCGTATTCCCTCAAAAACGAGAAACATGTTCTCGATCGTCTAGGTTCCTGTCAACAAATCGTTAGTTGTTTCGGAGATGATTATACCTTCGAGAATGGTCGCGAATATTACAATCTGTTTCTGGAATTCGCTTCTGCCGGTACTCTCGTTGATCAAGTTAAATTCCACGGTGGCCGGATTCCAGAACAGAATATTCGCGGGTATACCAGGTCAATTGTTGAAGGTCTTAACCATATTCATAGCAATGGATTCGTTCATTGTGATATAAAGCTTCAAAACATTCTTGTATTCCATGATGGTGAAATCAAAATCGCTGATTTTGGTCTTGCGAAAAAATCAGGGGAAGAACAGAGTAGGTTGGAATGCAGGGGAACTCCAATGTATATGTCGCCCGAGTCAGTGATCGACGGAGAGCATGAGTCACCGGCAGATATTTGGGCACTTGGGTGTGCCATGGTGGAGATGATGATGGGAAAACCAGCATGGAATTTGGAGAAAGATTCATCTATGTGTTCGTTGTTGCTTCGAATTGGAAGCGGAGAAGAATCCCCGATGATACCTGAAGATTTATCAAAAGAAGGAAAAGATTTTGTGGAGAAATGTTTTATTAAGGATCCAAGAAAAAGATGGACGGCTGAGATGCTTTTGAATCATCCATTCATTGAAGAAGTGAAGAAGAATGTTAATGAAGCATCACCAAGAGATCATTTTGATTTCATTGATTGGGTTTCAAGTGTTGCGGATTTAACTCCGAGTTCGCCGGAACATGAGGAGTCGTGTCAATGGAGTTTTGATTCTTATTCTTGTTCGGCAGCGGATCGAATCCGGCAGCTTGTGACGGTTGAAGTGTCGGTGAGTTGGTTGGAGTCAGACAGTTGGATTAGTGTTAGATGA 1026 0.422 MDWVRGESVGRGTFATVHLVIPKATSNYTIFPSPTAVKTSEVSTSYSLKNEKHVLDRLGSCQQIVSCFGDDYTFENGREYYNLFLEFASAGTLVDQVKFHGGRIPEQNIRGYTRSIVEGLNHIHSNGFVHCDIKLQNILVFHDGEIKIADFGLAKKSGEEQSRLECRGTPMYMSPESVIDGEHESPADIWALGCAMVEMMMGKPAWNLEKDSSMCSLLLRIGSGEESPMIPEDLSKEGKDFVEKCFIKDPRKRWTAEMLLNHPFIEEVKKNVNEASPRDHFDFIDWVSSVADLTPSSPEHEESCQWSFDSYSCSAADRIRQLVTVEVSVSWLESDSWISVR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02618 341 SUPERFAMILY Protein kinase-like (PK-like) 3 309 IPR011009 -
Vifa4g02618 341 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524
Vifa4g02618 341 Pfam Protein kinase domain 5 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02618 341 Gene3D Transferase(Phosphotransferase) domain 1 95 314 - -
Vifa4g02618 341 ProSiteProfiles Protein kinase domain profile. 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02618 341 CDD STKc_MAPKKK 2 265 - -
Vifa4g02618 341 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 295 - -
Vifa4g02618 341 Gene3D Phosphorylase Kinase; domain 1 1 94 - -
Vifa4g02618 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vifa4g02618 341 SMART serkin_6 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02618 Vifa-Chr4 802625656 802626681 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02618 1 341 MAP Kinase Kinase Kinase AT4G36950 52.011 4.37e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa4g02618 Pkinase 1.5e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02618 - - gmx:100798607 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02618 4 802625656 802626681 Vifa4g02618 4 802625656 802626681 ECH
Vifa1g07202 1 1112612986 1112613951 Vifa4g02618 4 802625656 802626681 PCT