Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02617 ATGGATTGGGTACGAGGAGAATCAGTTGGTAGAGGAACCTTTGCAACCGTTCATTTAGTTTTACCCAAAGGTAGTTCTAATTCCACTCTATTTCCTTCTCCGACAGCCGTCAAAAGCTCCGAGGTTTCAACCTCGTATTCCCTCAAAAACGAGAGACATGTTCTCGATTGTTTAGGTTCCTGTCAGCAAATCATTCGTTGTTTTGGAGATGATTATACCTTCGAGAATAGTCACGAGTATTACAATCTGTTTCTTGAATATGCTTCTGCCGGTACTCTCGCCGATCAAGCTAAATTCCACGGTGGCCGGATTCCAGAACAGAATATTCGCGGTTATACCAGGTCAATTGTTGAAGGGGAGGAACAGAGTAGGTTGGAATGCAGGGGAACTCCACTTTTTATGTCGCCGGAATCAGTTAACAACGGGGAGTATGAGTCGGCGGCGGATATTTGGGCACTTGGGTGTGCGGTGGTGGAGATGGTGACAGGAAAACCAGCGTGGAGTTTGGAGAAAGATTCGTCTATGTGGTCGTTGTTGCTTCGAATTGGTGGCGGAGAAGAATCACCGATGATACCACAAGATTTATCAAAAGAGGGAAAAGATTTTGTTGAGAAATGTTTTGTTAAAGATCCAAGAAAAAGATGGACGGCTGAGATGCTTTTGAGTCATCCATTTATTGAAGAAGTGAAGAATGGTAATGAAGCATCACCAAGAAATCACTTTGATTTCAATGATTGGGTTTCTAGTGTTAGTCGTTCAACTCCAAGTTCGCCGGAATTTGAAGAGTCGTGCCAAAGGAATTTTGATGCTTATTCTTTTTCGGGTGTGGATCGCCTCCGGCAGCTTGTGACTGTTGAAGTTCCAGTGACTTGGTCGGAATCAGACAGTTGGATTAATGTTAGGTGA 906 0.4382 MDWVRGESVGRGTFATVHLVLPKGSSNSTLFPSPTAVKSSEVSTSYSLKNERHVLDCLGSCQQIIRCFGDDYTFENSHEYYNLFLEYASAGTLADQAKFHGGRIPEQNIRGYTRSIVEGEEQSRLECRGTPLFMSPESVNNGEYESAADIWALGCAVVEMVTGKPAWSLEKDSSMWSLLLRIGGGEESPMIPQDLSKEGKDFVEKCFVKDPRKRWTAEMLLSHPFIEEVKNGNEASPRNHFDFNDWVSSVSRSTPSSPEFEESCQRNFDAYSFSGVDRLRQLVTVEVPVTWSESDSWINVR 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02617 301 Gene3D Transferase(Phosphotransferase) domain 1 2 120 - -
Vifa4g02617 301 SUPERFAMILY Protein kinase-like (PK-like) 3 261 IPR011009 -
Vifa4g02617 301 Gene3D Transferase(Phosphotransferase) domain 1 121 245 - -
Vifa4g02617 301 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02617 301 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524
Vifa4g02617 301 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 119 - -
Vifa4g02617 301 Pfam Protein kinase domain 126 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02617 Vifa-Chr4 801688138 801689160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02617 1 301 MAP Kinase Kinase Kinase AT4G36950 47.262 3.72e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa4g02617 Pkinase 4.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02617 - - gmx:100798607 368.622