Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02612 ATGGACATGATCTCAATGATGATGCAAATGGAAAAGTTCCCTGATAATTTCTCTGAACCTTCCTCTTACCAAGAAATTATCAATGGAACTTCCACTACTTCCAATACTGTTCCATTATTTAACTTCTCTCCACAAACCTTGACTGATCCATTTCTACACTCTAATGTGAACTTCAACAACACCATCCAACAACAAATGATGACACCATCTTATAACCCTAATTCTTCTGATAAGAAGAATTCCATGGCGGCCATGAGGGAAATGATATTCAGAATGGCAGTGATGCAACCGGTGCATATCAATCCGGAGTCGATCAGGCCACCGAAGAGAAGGAACGTGAAGATATCGAAGGATCCGCAGAGCATAGCAGCAAGGCATAGAAGGGAAAGGATAAGTGAAAGGATAAGGATATTGCAGAGATTAGTACCTGGTGGAACTAAAATGGACACTGCTTCTATGTTAGATGAAGCTATACATTATGTCAAGTTTTTGAAGAAACAGGTTCAGAGTTTGGAACAAGCTGGTGCTAATAATAGATCATCATCACACATTGCTGCTGGTGGTGCTATGAATAATTTTAATCTGATGAATTATTCTTCTGCTTTGATGATGAAGGGTTGTCAACCTTTTCAAATGGCGGGGTCCACTTCTAAACAATTGCTTAGCTAG 669 0.3961 MDMISMMMQMEKFPDNFSEPSSYQEIINGTSTTSNTVPLFNFSPQTLTDPFLHSNVNFNNTIQQQMMTPSYNPNSSDKKNSMAAMREMIFRMAVMQPVHINPESIRPPKRRNVKISKDPQSIAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEQAGANNRSSSHIAAGGAMNNFNLMNYSSALMMKGCQPFQMAGSTSKQLLS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02612 222 SMART finulus 121 170 IPR011598 GO:0046983
Vifa4g02612 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 174 IPR036638 GO:0046983
Vifa4g02612 222 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 31 212 IPR045843 GO:0003700|GO:0006355
Vifa4g02612 222 Pfam Helix-loop-helix DNA-binding domain 122 164 IPR011598 GO:0046983
Vifa4g02612 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 164 IPR011598 GO:0046983
Vifa4g02612 222 Gene3D - 114 185 IPR036638 GO:0046983
Vifa4g02612 222 Coils Coil 154 174 - -
Vifa4g02612 222 FunFam BHLH transcription factor 118 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02612 Vifa-Chr4 799429586 799430254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02612 6 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 58.854 6.71e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g02612 HLH 8.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02612 - - gmx:100800816 252.292