Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02611 ATGGAGCCGCGAAAGCTTGTGGTTATGGGTATCCCATGGGACGTTGATACTGAGGGCTTGAAAGAATATATGAGCAAATTTGGTGAGCTAGAAGATTGTTATATTATAAAGGAGCGGTCAACTGGCCGGTCTCGCGGTTTTGGATATGTTATATTTACATCAGTGGATGATGCTAAGAACGTGCTATCCAGTGAACACAGTCTTGGCAACAGGATACTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCGGTCAAAAAGGTTACCAGAATCTTTGTGGCAAGGATTGCCCCATCAGTAACAGAAGCAACTTTTAGGAGTCATTTTGAGAAATACGGTAATATAACAGATTTGTATATGCCAAAGGATCGAGGATCTAAAACTCATCGAGGAATTGGTTTTATCACTTTTGCAAGTGCAGATTCTGTAGAGAACTTGATGAAAGAAACCCATGAACTCGGAGGTTCTGATGTGGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAAGCCAACTGGCAGAACCAGAACGTCACAAGGAGGATATGGTGCATATAATAATGCTTATATTTCTGCACCAACTAGATATGCAGCACTTGGTGCTCCGACTATGTATGATCATCCCAGTTCAATTTATGGAAGGGGAGAACCTGTTCACGGAATGAGCAAAAAGATCTTTGTTGGCCATCTTCCTCCGGAGGCAACCACTGAGGATCTTCGCTTGTATTTTGGAAGATTTGGCCATATATTAGATGTTTATATTCCTAGGGATGTCAAGAAATCTGGTCATAGAGGCTTTGGTTTTGTGACTTTTGCGGACTATGGTGTTGCAGATCGTGTCTCTCGAAGATCTCATGAAATTTGTGGACATCAGGTTGCCATCGAATCACCCACACCTCTTGATGACGCAGGGCCTAGTGGCAATACTATGGTGAATAGTCTGGATTCTTTCAGGGAATGTGGCGCTCCTGTGAGGCCTTATTTTGATCAAAGTCCTGTGAGGCCTTATTTTGATCAAAGTCCTGTGAGGCCTTATTTTGATCAAAGTCCTGTGAGGCCTTATTTTGATCAAAGTCCTGTGAGGCCTTATTTTGATCAAAGTCCTGTGAGGCCTTATTTTGATCAAAGTCATGTGAGGCCTTATTTTGATCAAAGTCCTGTGAGGCCTTATGGGAGAATGTATGATAACCTGAACTTCGACGATTGGGGTTATGGAGTTGCTAGTAGAAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1278 0.4311 MEPRKLVVMGIPWDVDTEGLKEYMSKFGELEDCYIIKERSTGRSRGFGYVIFTSVDDAKNVLSSEHSLGNRILEVKVATPKEEMRAPVKKVTRIFVARIAPSVTEATFRSHFEKYGNITDLYMPKDRGSKTHRGIGFITFASADSVENLMKETHELGGSDVVVDRATPKEDDFKPTGRTRTSQGGYGAYNNAYISAPTRYAALGAPTMYDHPSSIYGRGEPVHGMSKKIFVGHLPPEATTEDLRLYFGRFGHILDVYIPRDVKKSGHRGFGFVTFADYGVADRVSRRSHEICGHQVAIESPTPLDDAGPSGNTMVNSLDSFRECGAPVRPYFDQSPVRPYFDQSPVRPYFDQSPVRPYFDQSPVRPYFDQSPVRPYFDQSHVRPYFDQSPVRPYGRMYDNLNFDDWGYGVASRRPSRADWRYRPY 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02611 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Vifa4g02611 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 64 IPR000504 GO:0003723
Vifa4g02611 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 284 IPR000504 GO:0003723
Vifa4g02611 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 153 IPR000504 GO:0003723
Vifa4g02611 425 Gene3D - 2 83 IPR012677 -
Vifa4g02611 425 SUPERFAMILY RNA-binding domain, RBD 92 287 IPR035979 GO:0003676
Vifa4g02611 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Vifa4g02611 425 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Vifa4g02611 425 Gene3D - 84 197 IPR012677 -
Vifa4g02611 425 SMART rrm1_1 5 76 IPR000504 GO:0003723
Vifa4g02611 425 SMART rrm1_1 228 299 IPR000504 GO:0003723
Vifa4g02611 425 SMART rrm1_1 93 164 IPR000504 GO:0003723
Vifa4g02611 425 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Vifa4g02611 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 303 IPR000504 GO:0003723
Vifa4g02611 425 Gene3D - 224 306 IPR012677 -
Vifa4g02611 425 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Vifa4g02611 425 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 225 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02611 Vifa-Chr4 798654679 798660040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02611 6 286 Eukaryotic Initiation Factors Gene Family AT3G16380 21.799 9.87e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02611 K14411 - gmx:100795240 546.584