Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02606 ATGTTGTTTCGTATGAAGTACAAATGTTGTTTTCTTTGGGTGGATGTTTCTATTCCCGTGCTTCATTCGTCTTTATCCTCACGTGTGGATCGCATGATTGAAGCGGGTCAAGTGAATGAAGTTCGTGAGTTTTTCAACCAAAAAGATTTTGATTACGATTACACTAGAGGGATACGAAGAGCCATTGGTGTACCTGAATTTGACGAGTTTTTTAGAGCGGAGTCACAAGGTCTAACAGATGGAAGAACTATGAAGAAGCTTCTAGAAGTAGCTACTGATGCTCTTAAAGTGAATAACTGTAAGCTTGCGAGTAAACAAGTTGAGAAGATTCATAGGCTTTATGGTATATGGAAAAAGAACATGCACCGTCTTGATGCTACGGAGGTTGTGCTTAAGGAAGATAATTGGGAGGATCGTGTGTTGGCGAAGAGTCTTAGGATTGTACACAAGTTTCTATACGAGGATGGTGGTAATGGTGGTTGTATTGAGCCTGCAAAAATTCCGATTGTGGCAGGGTTTTCACATGTGCTTATCTGTCCAAAGCGCGAAGTTAAGCGTTTTCTTGATCTAACTGCTGAGGAGACTTCTGATTTATGGCTCACTGCACAAAAAGTAGGCAGGCAGCTTGAGAGCTACCACAAGGCTTCATCACTCACTTTGGCCATCCAAGATGGGCCCCAAGCAGGACAGACAGTACCTCATGTTCACATTCATGTTGTCCCGCGGAAAGGTGGTGATTTTGAGAAGAATGACGAGATATATGATGCAATGGATGAAAAGGAGAAGGAATTGAAGGAAAAACTTGATTTGGATAAGGAGAGGAAAGACAGGAGCGCGGAAGAGATGTCACAAGAGGCAGAGGAATACAGAAAACTTTTCTTGTAA 885 0.4226 MLFRMKYKCCFLWVDVSIPVLHSSLSSRVDRMIEAGQVNEVREFFNQKDFDYDYTRGIRRAIGVPEFDEFFRAESQGLTDGRTMKKLLEVATDALKVNNCKLASKQVEKIHRLYGIWKKNMHRLDATEVVLKEDNWEDRVLAKSLRIVHKFLYEDGGNGGCIEPAKIPIVAGFSHVLICPKREVKRFLDLTAEETSDLWLTAQKVGRQLESYHKASSLTLAIQDGPQAGQTVPHVHIHVVPRKGGDFEKNDEIYDAMDEKEKELKEKLDLDKERKDRSAEEMSQEAEEYRKLFL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02606 294 Gene3D - 3 160 IPR027417 -
Vifa4g02606 294 ProSiteProfiles HIT domain profile. 175 249 IPR011146 GO:0003824
Vifa4g02606 294 Coils Coil 250 292 - -
Vifa4g02606 294 CDD FHIT 168 253 IPR039383 -
Vifa4g02606 294 Pfam IPP transferase 6 107 - -
Vifa4g02606 294 Pfam HIT domain 175 243 IPR011146 GO:0003824
Vifa4g02606 294 PANTHER BIS(5'-ADENOSYL)-TRIPHOSPHATASE 174 293 - -
Vifa4g02606 294 ProSitePatterns HIT domain signature. 223 241 IPR019808 -
Vifa4g02606 294 Gene3D - 165 294 IPR036265 -
Vifa4g02606 294 FunFam Fragile histidine triad 165 294 - -
Vifa4g02606 294 SUPERFAMILY HIT-like 175 293 IPR036265 -
Vifa4g02606 294 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02606 Vifa-Chr4 797178639 797180186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02606 6 159 C2H2 Transcription Factor Family AT2G27760 29.282 9.02e-15 72.4