Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02604 ATGTCTCCGACAGCTGCGCCATTTTTGATGAAGACCTATGAGATGGTTGATGATTCTATGACTAACGATGTGATTTGCTGGGGTGAAAATGGCGACAGTTTTATTGTGGTGCAACATGCTGAGTTTTCTAGGGACTTGCTTCCAAAATATTTCAAGCACAACAATTTCTCAAGTTTTGTTCGTCAACTCAATACATATGGATTTCGAAAAATTGTTTCTGACAAATGGGAATTCGCCAACGAGAATTTCAAGCAAGGGCGGAAAGAGCTACTGCCAGCAATCAAGCGTCGGAAGAGTCAATCATATGTAGCCATAGGATCCGTTGGTGTCCATGGAAATTCAGCATCGAATTCCGGTCCCAATGACATGGACTCGACCTTGACAGGATTAGGATCAATGGAACGAAATATTCATCGCGCTAATTTATCAATGGAAAACGAGAACCTGAAGAAGGACAACGAGAAACTTAAGTGTCAATTGGCTCTCAAGAAGAAACAATGCGACCAACTAATCGCATTTCTTCGTGACAATGTCAATATTGGGCCTGATCAGATTAACTGTGTCATTAGGCAAGGAACGAGCGGGTCCAGTCTTGATGCGGAGCGTGCTGATGATGGTGTTGTAGGTGATGAAGGGAAATGTAAGGGTGAAGAGGGTGTGAAGCTGTTTGGAGTTTGGATGAAGGGTGGTGGAGAAGGGAAAAACAAAGTGAAGACTGAAAATGGTCAGGGAAAGTGTCGCAAGAGGGGACATGAAGAGGAAATTGGTGGTGAAAACAAGGAGTTACAGATTGATATTTAG 801 0.4307 MSPTAAPFLMKTYEMVDDSMTNDVICWGENGDSFIVVQHAEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKIVSDKWEFANENFKQGRKELLPAIKRRKSQSYVAIGSVGVHGNSASNSGPNDMDSTLTGLGSMERNIHRANLSMENENLKKDNEKLKCQLALKKKQCDQLIAFLRDNVNIGPDQINCVIRQGTSGSSLDAERADDGVVGDEGKCKGEEGVKLFGVWMKGGGEGKNKVKTENGQGKCRKRGHEEEIGGENKELQIDI 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02604 266 Pfam HSF-type DNA-binding 8 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa4g02604 266 ProSitePatterns HSF-type DNA-binding domain signature. 47 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa4g02604 266 FunFam Heat stress transcription factor B-4 1 98 - -
Vifa4g02604 266 Gene3D - 2 98 IPR036388 -
Vifa4g02604 266 MobiDBLite consensus disorder prediction 233 266 - -
Vifa4g02604 266 SMART hsfneu3 4 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa4g02604 266 SUPERFAMILY "Winged helix" DNA-binding domain 6 97 IPR036390 -
Vifa4g02604 266 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 192 IPR027725 -
Vifa4g02604 266 Coils Coil 139 166 - -
Vifa4g02604 266 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa4g02604 266 PRINTS Heat shock factor (HSF) domain signature 46 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa4g02604 266 PRINTS Heat shock factor (HSF) domain signature 8 31 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02604 Vifa-Chr4 795481245 795484076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02604 4 229 HSF AT4G36990 46.414 5.71e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa4g02604 HSF_DNA-bind 2.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02604 K09419 - gmx:100801897 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02604 4 795481245 795484076 Vifa4g02604 4 795481245 795484076 ECH
Vifa1g07157 1 1104606101 1104607074 Vifa4g02604 4 795481245 795484076 PCT