Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02602 ATGGCTGATGTTCCCGTTTCGAGTGATAACAATGTTGGAACAGTATCCTTACCAGATAAGGAACAAGAAAACTCTATCATAGTATCCACTCTCATTCACGTTCTCTCCTCGTCAAACAATGTTGCTGTTCCAAACCAAGAAAGAAAACGGGAATCAGAAACAGCCACGTCATCATGTGCAAGTGTATCCCTCCAGAACCAGTATAATCCGTACGCGTGTCATGCATGTAAAATCAACGGCTGTCTCGGTTGCAAGCTCTTCAGTGAGAAAGAGAAAGAGGAGAAGATAAAAAAATACAGGGGAGTGAGGCAGAGAGCATGGGGAAAATGGGTGGCTGAGATACGAGACCCAAAAAGGGCCACTCGTGTTTGGCTTGGTACTTTTGCTACGGCGGTGAATTCTGCAAGAGCTTATGATCAAGCTGCTATTAAGTTTCATGGTGCTAGAGCTAAACTCAATTTTGAATCCTCTAATTATACTGTTACTGATGAAAAGATGCAAAGTGCGACAGTACAGGAACATAGTGAGGTTGCAGGGATGAATCAAACAAAAACTACTATCTTATCATTTGGGTCAACAAGCGAAGTAGACTAG 594 0.4259 MADVPVSSDNNVGTVSLPDKEQENSIIVSTLIHVLSSSNNVAVPNQERKRESETATSSCASVSLQNQYNPYACHACKINGCLGCKLFSEKEKEEKIKKYRGVRQRAWGKWVAEIRDPKRATRVWLGTFATAVNSARAYDQAAIKFHGARAKLNFESSNYTVTDEKMQSATVQEHSEVAGMNQTKTTILSFGSTSEVD 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02602 197 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
Vifa4g02602 197 SMART rav1_2 98 161 IPR001471 GO:0003700|GO:0006355
Vifa4g02602 197 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Vifa4g02602 197 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Vifa4g02602 197 Gene3D AP2/ERF domain 97 156 IPR036955 GO:0003700|GO:0006355
Vifa4g02602 197 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Vifa4g02602 197 PANTHER DNA-BINDING DOMAIN 56 167 IPR044808 GO:0003700|GO:0009873
Vifa4g02602 197 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
Vifa4g02602 197 FunFam Ethylene-responsive transcription factor 2 97 156 - -
Vifa4g02602 197 CDD AP2 99 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02602 Vifa-Chr4 794920232 794920825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02602 21 160 AP2-EREBP Transcription Factor Family AT4G34410 42.135 7.87e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g02602 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02602 - - psat:127136619 265.388