Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02596 ATGTCCAAAATGGTGGCGGTTGATGAAAAGAAGAAGGGTCAAATGGTTCCACAATATGATGATCAAGGCGTAACTTTGGCATTTCATGGCAGAGAGGTCTATGAGGGTGTTCCTCTTGCACATTTCCCTAAAAAGTCTCCTTTAAACGATAAACATAACAAGTTCATGAATAGTCCAACAAGACAAGCAACACATGATGAGGCACAATCACACAAGTTTGCGAGCTCATCAAAAGAGACAACAGATGCAACGTTTTCTCGTGGCGAGGCTGTGATTCAAGCCGAAGGACTCCGATCAAGTTTGGAAACGGAGTTCCCAAGTTTTGTGAAGTCCTTGGTCAGATCGCATGTAGCTAGTTGTTTTTGGATGGGACTACCTGTGGCGTTCTGTAAAAGACATTTACCAGATAAGGATACAACTATAATTTTGGAAGATGAATCTGGTAGAGAATACAAGACAAAATACATTGCATGTAAAACTGGATTGAGTGCTGGTTGGAGACAGTTTTCTGCTGTGCATAAATTGCTAGAGGGTGATGTGGTGGTATTTCAATTAGTTGAACCAACCAAATTTAAGGTTTATATAATAAGAGCTATCAGGGAACCAGAGAATCAAGAAAGTTGCTCAAAACAAAAAGTTGGAGGAAAAAATAACACAGATACTGATGTTGTAGCAAGTAATAGTCCAAAAAGAAAAAGCAGTAAACCTATCCCACAAGACATCCAAAAGAAAAACAAAATTATTGTATCGAAAACGGAGACTAAGGCTAAACAGTATACAGAACAACTATATGAAAATGGTAGTGAGGAAGCTTTGTCCGAAATATTGGAGGCATATAAAATGCCTGAATTCAAAGATTTAAACGGTTTCGAAAATTTCAGAATCATAGTCAATGGGATGCTAATTGACAATGAACTCTCTACCGAAGTTCGAAACAAGTACTACAAACTGTGTTACAGTCAACAAGCTTTTCTTCATGACAATCTCATCAAAGGCTTGAACTATAATTTAATTTCTGGAGTTATATATGAAGTTGTTAACATTGCTGATGCGATAAAAGTCAGTGTGATATCTACGCCACGTTTTGAGTTTTATAATTGGGATAAGACTTTGCTAGCATTTGAGAATTTGGGCATGAATGTTGAATTTTTGAGACATCGGTTGCGCAGGCTTGTTAGCCTTGCTTATGAGACGGACAACGGCTTAGAGACTAGAAGATACTTGGCGTATAGAACCGAGGAACACGGTCGAGTAGATGATGAAATAAAGAACATGGAAACAAAGCTTGAGGAATTGAAAAAAGCTTGTAATGGATTTGGTGATTATCTTGAGGGTTTGAAGCACAAAGCTGAAAGGTATGAACATAAGTTTCAAAAAGAAGTTGCTGCTAATTGGTGA 1398 0.3784 MSKMVAVDEKKKGQMVPQYDDQGVTLAFHGREVYEGVPLAHFPKKSPLNDKHNKFMNSPTRQATHDEAQSHKFASSSKETTDATFSRGEAVIQAEGLRSSLETEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTIILEDESGREYKTKYIACKTGLSAGWRQFSAVHKLLEGDVVVFQLVEPTKFKVYIIRAIREPENQESCSKQKVGGKNNTDTDVVASNSPKRKSSKPIPQDIQKKNKIIVSKTETKAKQYTEQLYENGSEEALSEILEAYKMPEFKDLNGFENFRIIVNGMLIDNELSTEVRNKYYKLCYSQQAFLHDNLIKGLNYNLISGVIYEVVNIADAIKVSVISTPRFEFYNWDKTLLAFENLGMNVEFLRHRLRRLVSLAYETDNGLETRRYLAYRTEEHGRVDDEIKNMETKLEELKKACNGFGDYLEGLKHKAERYEHKFQKEVAANW 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02596 465 ProSiteProfiles B3 DNA-binding domain profile. 108 199 IPR003340 GO:0003677
Vifa4g02596 465 SMART B3_2 108 199 IPR003340 GO:0003677
Vifa4g02596 465 Gene3D - 89 200 IPR015300 -
Vifa4g02596 465 MobiDBLite consensus disorder prediction 206 238 - -
Vifa4g02596 465 Pfam B3 DNA binding domain 108 198 IPR003340 GO:0003677
Vifa4g02596 465 SUPERFAMILY DNA-binding pseudobarrel domain 101 197 IPR015300 -
Vifa4g02596 465 Coils Coil 415 435 - -
Vifa4g02596 465 CDD B3_DNA 106 197 IPR003340 GO:0003677
Vifa4g02596 465 MobiDBLite consensus disorder prediction 45 85 - -
Vifa4g02596 465 MobiDBLite consensus disorder prediction 208 235 - -
Vifa4g02596 465 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 61 200 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02596 Vifa-Chr4 793741760 793744243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02596 86 197 B3 DNA Binding Superfamily AT3G19184 50.893 8.04e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa4g02596 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02596 - - mtr:120577567 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02596 4 793741760 793744243 Vifa4g02596 4 793741760 793744243 ECH