Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02575 ATGGGTCTCTGCACTTCAAAACCACTCTCTTCTCCCAATTCTGAAACCAACATTCAAATTCAGTTACAACAAACCACTATTACTAACACCAATTCTAATTCTCATTCAAATTTAGAAATTGAAAACCCTAAAAAATCACCGTTTTTCCCTTTCTACTCTCCCAGTCCAGCTCACCATTTATTTTCCGGCAAGTTTCCGAAAACTCCGGCGACTCCGGCGAGGAGATTCTTCAGACCAGCTTCTCCGGCGAAGCACATTAGGTCGCTGCTAGCTCGGCGTCATGGCTCGGTTAAGCCGAATGGTGCAAGCGTATCGAAAGGGAGTGAAGGTGAAGGTGAGGGTGTTGCTCTTGATAAGAATTTTGGATTTTTGAAGAATTTTGGGAGGAAGTATGAGCTTGGTGAAGAGGTTGGTAGAGGGCACTTTGGTTATACTTGTGCTGCTCTTGTGAAGGTTAATAGTAAGAGTGATGTTAAGGGTCATCGTGTTGCTGTTAAGGTTATTCAAAAAGTTAAGATGACTACTGCAATTGCTATTGAGGATGTGAGAAGGGAGGTGAAGATTTTGAGAGCTTTGAATGGACATAAGAATTTGATTAAATTTTATGATGCTTATGAAGATCATGATAATGTTTATATAGTTATGGAGTTGTGTGAAGGGGGTGAGCTTTTGGATAGAATACTATCAAGAGGAGGGAAATACTCAGAGGAAGATGCAAAAGGTGTCATGACACAAATACTAAATATTGTTGCATTTTGCCATCTACAGGGTGTTGTTCATCGTGATCTTAAACCTGAGAACTTCTTGTTTTCAACCAAAGATGAGAACTCAGAGCTGAAGGCCATAGACTTTGGTTTGTCGGATTTTGTCAAACCGGATGAACGACTTAATGATATTGTTGGTAGTGCATACTATGTTGCTCCCGAGGTTCTGCATAGAGCTTACAGTACAGAAGCTGACGTCTGGAGTATTGGCGTGATTGCTTATATTTTATTATGTGGAAGTCGTCCATTTTGGGCACGGACTGAATCTGGGATATTCCGTTCTGTATTGAAAGCTGATCCAACTTTTGATGAACCTCCTTGGCCTTCTTTGTCAGACGATGCAAAAGATTTTGTTAAGCGATTACTAAATAAAGATCCAAGGAAAAGAATGACTGCAGCACAGGCATTAGGTCACCCATGGATTAAAAGTTATAAGGAAGTAAAAGTACCCCTGGATATTCTAGTGTTCAAGCTCATGAAGTCATACATGCGTTCCTCGTCTCTACGAAAAGCAGCTTTAAGGGCTCTGTCTAAGACGTTAGCGGCTGATGAGCAGAACTATTTGAAGGAGCAGTTTTCACTTTTAGAACCAAATAAAAATGGCACAATTAGCTTGGAAAATATCAAAACGGCCTTGATGAAGAATGCCACGGATGCTATGAAGGAGTCACGCATTCCTGATCTTCTGGCATCTGTAACATTTAATGCCTTGCAATATAGAAGGATGGATTTTGATGAGTTCTGTGCAGCTGCACTTAGTGTTCATCAACTTGAAGCCCTTGACCGCTGGGACCAACATGCCCGCTGCGCCTATGAAATTTTTGAAAAGAATGGAAACAGAGCTATAATGATTGAGGAACTAGCTTCGGAGCTTGGCCTCGGTCCAACTGTACCTGTTCATGCTGTTCTTCATGACTGGATTAGGCACACCGATGGAAAGTTAAGCTTCCTCGGGTTCGTTAAACTGTTGCATGGTCCATCTCGAAGTCTTGTAAAACCTCAGTAA 1770 0.4153 MGLCTSKPLSSPNSETNIQIQLQQTTITNTNSNSHSNLEIENPKKSPFFPFYSPSPAHHLFSGKFPKTPATPARRFFRPASPAKHIRSLLARRHGSVKPNGASVSKGSEGEGEGVALDKNFGFLKNFGRKYELGEEVGRGHFGYTCAALVKVNSKSDVKGHRVAVKVIQKVKMTTAIAIEDVRREVKILRALNGHKNLIKFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYSEEDAKGVMTQILNIVAFCHLQGVVHRDLKPENFLFSTKDENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRSVLKADPTFDEPPWPSLSDDAKDFVKRLLNKDPRKRMTAAQALGHPWIKSYKEVKVPLDILVFKLMKSYMRSSSLRKAALRALSKTLAADEQNYLKEQFSLLEPNKNGTISLENIKTALMKNATDAMKESRIPDLLASVTFNALQYRRMDFDEFCAAALSVHQLEALDRWDQHARCAYEIFEKNGNRAIMIEELASELGLGPTVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLVKPQ 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02575 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Vifa4g02575 589 ProSitePatterns Protein kinases ATP-binding region signature. 137 166 IPR017441 GO:0005524
Vifa4g02575 589 Gene3D Transferase(Phosphotransferase) domain 1 223 410 - -
Vifa4g02575 589 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Vifa4g02575 589 Gene3D - 414 577 - -
Vifa4g02575 589 CDD STKc_CAMK 130 395 - -
Vifa4g02575 589 FunFam CDPK-related kinase 3 123 298 - -
Vifa4g02575 589 PANTHER SERINE/THREONINE-PROTEIN KINASE 118 564 - -
Vifa4g02575 589 FunFam Calcium-dependent protein kinase SK5 306 400 - -
Vifa4g02575 589 SMART serkin_6 131 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02575 589 SUPERFAMILY Protein kinase-like (PK-like) 129 429 IPR011009 -
Vifa4g02575 589 FunFam CDPK-related kinase 1 433 507 - -
Vifa4g02575 589 Gene3D Phosphorylase Kinase; domain 1 124 222 - -
Vifa4g02575 589 MobiDBLite consensus disorder prediction 91 112 - -
Vifa4g02575 589 Gene3D - 436 507 - -
Vifa4g02575 589 Pfam Protein kinase domain 131 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02575 589 ProSiteProfiles Protein kinase domain profile. 131 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02575 589 FunFam CDPK-related kinase 1 124 222 - -
Vifa4g02575 589 SUPERFAMILY EF-hand 424 580 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02575 Vifa-Chr4 783791608 783795240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02575 1 587 EF-hand Containing Proteins AT3G50530 69.876 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa4g02575 Pkinase 2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02575 K00924 - gmx:100803313 917.916