Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02561 ATGATTCACCCGTGTGCGGCGTGCAAGCATCTCCGTCGAGCTTGCGACTCCAAATGCGATCTAGCTCCCTACTTCCCGGCGGATAAACCACATTGTTTCAGCGTGGTGCACGCGGTATTTGGAAAAAGCAATGTGTCAAAGCTGTTGCAAGAGCTAGACGTTACTCAACGTGAACAAGCTGTTGATTCATTGGTGTATGAAGCTGAGGCGCGTATGAGAGATCCCGTTTATGGCTGCGTGAGTTTTGTATCGATTCTTCAGCAGAGGTTGAATGAAGTTCAAGAGAAACTCAGGAATGTGAAGAATGAACTGGCTAAGTACTTTGATCATGATACTGTTGAATTTGTTATCAACAATCCTCATTATTTTGGATTCGAGCCTGACAACAAGGTTGGTGCGTCTCAGCAACGACCAATTGTGACCGCTACTGAGCAGCATCGAAACTTGGAACATTTGAGACAAATGTTTCTTGGATCTGGTGGAGGATTCTCTATTGGTGATGGCGGTATGGGACATGATCATATGAATGTTCGTCATGATCATTTTGGTCCTTCTTCTGGTACTTTAGAAATGGGTGGCACTAGCACTAACGGTTATCAGATTCAGCAATCACCACATCAATAA 624 0.4455 MIHPCAACKHLRRACDSKCDLAPYFPADKPHCFSVVHAVFGKSNVSKLLQELDVTQREQAVDSLVYEAEARMRDPVYGCVSFVSILQQRLNEVQEKLRNVKNELAKYFDHDTVEFVINNPHYFGFEPDNKVGASQQRPIVTATEQHRNLEHLRQMFLGSGGGFSIGDGGMGHDHMNVRHDHFGPSSGTLEMGGTSTNGYQIQQSPHQ 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02561 207 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
Vifa4g02561 207 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 134 - -
Vifa4g02561 207 MobiDBLite consensus disorder prediction 188 207 - -
Vifa4g02561 207 Coils Coil 83 110 - -
Vifa4g02561 207 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
Vifa4g02561 207 MobiDBLite consensus disorder prediction 184 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02561 Vifa-Chr4 775204573 775205196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02561 4 160 AS2 family AT5G66870 50.318 5.46e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa4g02561 LOB 1.4e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02561 4 775204573 775205196 Vifa4g02561 4 775204573 775205196 ECH
Vifa4g02561 4 775204573 775205196 Vifa1g07084 1 1094627162 1094628133 PCT