Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02558 ATGCACCTCAACATCAGCAGGAGACACATCAATAGTCTCAGGAGCACCTTAACAGTCCTAGGAACGGGCACCTCGACAGCAATAAGCACCTCCAACACAATAGGTACCTCGTCAGTAAGAACCTCAGTACCAACTCATCGTTTAGGTGCACAAAACCAGCACTGTGCCTGCTCAGCCATCTGTTTCCGGTGTGAACCGGGTCGGAGGAAGATGATTCACCCGTGTGCGGCGTGCAAGCATCTCCGTCGAGCTTGCGACTCCAAATGCGATCTAGCTCCCTACTTCCCGGCGGATAAACCACATTGTTTCAGCGTGGTGCACGCGGTATTTGGGAAAAAGCAATGTGTCAAAGCTGTTGCAAGAGCTAGACGTTACTCAACGTGA 384 0.5156 MHLNISRRHINSLRSTLTVLGTGTSTAISTSNTIGTSSVRTSVPTHRLGAQNQHCACSAICFRCEPGRRKMIHPCAACKHLRRACDSKCDLAPYFPADKPHCFSVVHAVFGKKQCVKAVARARRYST 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02558 127 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 73 119 - -
Vifa4g02558 127 ProSiteProfiles LOB domain profile. 73 127 IPR004883 -
Vifa4g02558 127 Pfam Lateral organ boundaries (LOB) domain 74 122 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02558 Vifa-Chr4 775189947 775191526 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02558 74 119 AS2 family AT5G66870 54.348 1.23e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa4g02558 LOB 4.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02558 - - mtr:11411349 73.9442