Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02557 ATGGATCGGGCTGCGATGACGGTTGGACCGGGTATGGATATGCCGATCATGCACGACAGCGACCGTTACGATCTAGTCCGTGATATCGGGTCCGGAAATTTCGGTGTTGCTAGGTTGATGCAAGATAAGCAGACTAAGGAGCTTGTTGCCGTCAAGTATATCGAACGTGGTGATAAGATAGATGAAAATGTGAAGAGAGAAATCATTAATCACAGGTCTTTGAGACACCCTAACATTGTTAGGTTTAAGGAGGTTATTTTAACTCCTACTCATCTTGCTATTGTAATGGAGTATGCATCTGGAGGAGAACTATTCGAGCGAATCAGTAATGCTGGGCATTTTTCTGAGGATGAGGCTCGGTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGCCATGCAATGCAAGTATGTCACCGGGACCTGAAGTTGGAAAATACTTTGTTGGATGGAAGCCCGACTCCTCGTCTGAAGATATGTGATTTTGGTTACTCCAAGTCTTCAGTGCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCTGCATATATTGCTCCAGAAGTGTTACTGAGACAAGAGTATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGAGTAACCTTATACGTGATGCTAGTGGGATCATATCCCTTTGAAGATCCTAACGAGCCAAAGGATTTCCGGAAGACAATACAGAGAGTACTCAGTGTCCAGTATTCCATTCCAGACGCTGTTCAAATATCCCCAGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGAGAATTACCATGCCTGAAATCTGGACACATAAATGGTTTCTGACGAATCTTCCCATGGACCTGATGGATGAGAAGATAATGGGTAACCAATTTGAAGAGCCCGAACAACCTATGCAGAGCATTGATACAATCATGCAGATAATTTCAGAAGCTACTATACCAGCAGCTGGAACCTGTTCTTTAGACCAGTTTATGGCAGATAACATTGATATGGACGATGAATTTGATGATTTGGAATATGAATCTGAGCTTGATATAGATAGCAGTGGAGAGATAGTGTATGCCATTTACTAG 1092 0.4304 MDRAAMTVGPGMDMPIMHDSDRYDLVRDIGSGNFGVARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERISNAGHFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPTPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGSYPFEDPNEPKDFRKTIQRVLSVQYSIPDAVQISPECRHLISRIFVFDPAERITMPEIWTHKWFLTNLPMDLMDEKIMGNQFEEPEQPMQSIDTIMQIISEATIPAAGTCSLDQFMADNIDMDDEFDDLEYESELDIDSSGEIVYAIY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02557 363 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
Vifa4g02557 363 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02557 363 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02557 363 SUPERFAMILY Protein kinase-like (PK-like) 15 314 IPR011009 -
Vifa4g02557 363 PANTHER SERINE/THREONINE KINASE 22 305 - -
Vifa4g02557 363 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02557 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vifa4g02557 363 Gene3D Transferase(Phosphotransferase) domain 1 99 285 - -
Vifa4g02557 363 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Vifa4g02557 363 FunFam Serine/threonine-protein kinase SRK2E 99 287 - -
Vifa4g02557 363 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02557 Vifa-Chr4 774815549 774818749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02557 22 283 CBL-interacting serine-threonine protein kinases AT5G25110 43.431 2.24e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vifa4g02557 Pkinase 3.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02557 K14498 - gmx:100806949 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02557 4 774815549 774818749 Vifa1g07072 1 1091516397 1091519942 PCT