Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02523 ATGTTCCTTCACCATCATCATCACAACTCAAAGCTTTCTATTCTCATCATCATCACAATCTTCATAACAGGAATAACTGCTGATCAAAACAACAACCACTGCAACCAAAGATGCGGAGAACAAACCGTGAACTACCCATTCGGATTCTCAGAAGCTTGCAAAATCAAGTTAACCTGCAGCAACAGTCAAATCAAAATTGGAAACTTAAGTGTTCAAAAACTGAACTCTGATAGCATATTCATATCTCTACCAGCTAAATGCAACCGTAGCACCAGTTTCATATACCCGCTTTTCGCTTCGTTTTTCGCTGGAACACAGATAGATGTTGAAGGTTGTGATTCAAGAAAAAGTGATACCATCACTTGCTTCACGCGATCGCAGCGGAGAACGCGTGAGGATTTTCTTACGCTTGATGATTGGAATGGAACTGAATGTCAATCCTTGTTCTCTGCTATTGCTGTTGATAACAGCACAGTCGATGACGTTCTGCTTCAGTTTCAGGTGCTTGAGTTAGGGTGGTGGCTTGAAGGTTCTTGTTTATGTTCTGATCATGCTAATTGTACGGAGGTTCATCTTGCCGGAGGAAAACTAGGTTTCCGGTGTCGTTGCCGTGAAGGCTTAGTCGGAGATGGATTTGTAAACGGTACTGGTTGCCGGAGAGCTTCACAATGCACTCTTTCAACACTTGGGTCTAGCAAATGTGCAAAAGCACTCAGAATTGGTTTACTTCTTGGAGTGATCGTAGTTGGAGCCTTAGTGACGGCTGCACTGTCTTTAGTATGCTACTTTGCAAATCGCCGATCGACATGGCTAACAAAACAATTGACAGTAAGGCGCCTATTAAGAGAAGCCGCGGGAAACTACATTGTTCCTCTCTATCCTTACAAAGAAGTAGAAAGGGCCACAAATTTTTTCTCTGAGAAACACAGGCTAGGAACTGGTGCTTATGGCACGGTTTATGCAGGAAACCTTCACAACAATGAATTAGTTGCTATAAAAAAGATCAGGTATAGAGACACCAACAGTGTTGACCAAGTCATGAATGAAATCAAACTCCTTTCTTCGGTAAGTCACCCGAATTTAGTTCGACTTTTAGGTTGCTGCATAGAAAAAGGAGAACACATACTTGTTTATGAGTATATGCCAAATGGAACACTATCTCAACATTTACAAAGGGAAAGAGGTGGAACACTTCCTTGGACAATAAGACTCACCATTGCCTCTGAAACTGCTAATGCTGTAGCATTTCTTCATTCTTCAAATCCTCCGATTTATCATAGAGACATAAAATCTAGTAACATACTATTGGACTTTAGTTTTCAATCAAAAGTAGCGGATTTCGGACTTTCTAGGCTTGGCATGACAGAAATATCACATATCTCAACCGCGCCACAAGGGACTCCGGGTTATGTTGATCCACAATACCATCAAAACTTTCATCTTTCTGATAAAAGTGATGTCTATAGTTTCGGAGTTGTCTTGGTAGAGATAATAACAGCGATGAAAGTCGTTGATTTTGGTAGACCTCAGAGTGAGATTAATTTGGCAGCACTTGCTGTTGAAAAGATTAGGAAAGGCCGTGTCGACGACATCATAGATCCTTTCCTTGATCTTAATAGAGATGCATGGACACTCTATTCTGTTAACAAGGTAGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGCGAATCGAGGCCTAGTATGATTGAAGTTGCTGAGGAGTTGGATCATATCAGACGTAGCGGATGGGCGACAATGGAGGAAACTATATGCTTAGGCTCATCGGTTGGATCCGGGTGTTCATCACCTCGTTATAATGGAAATGAGAATTTAGTCTCGAAGAATGAGATACCGGTTGTTCCACAAAAGACTAATAGTTTTTTGCAAACAATAGAGGAAGTGAAGGATAGTTCCCCTGAATCTGTTCATGGTACTTGGTCAAGTAGACCTAGCTCACCTTCAACAAACAGCTTGTTAGGAAATGTTGTTCAGTGA 1998 0.4134 MFLHHHHHNSKLSILIIITIFITGITADQNNNHCNQRCGEQTVNYPFGFSEACKIKLTCSNSQIKIGNLSVQKLNSDSIFISLPAKCNRSTSFIYPLFASFFAGTQIDVEGCDSRKSDTITCFTRSQRRTREDFLTLDDWNGTECQSLFSAIAVDNSTVDDVLLQFQVLELGWWLEGSCLCSDHANCTEVHLAGGKLGFRCRCREGLVGDGFVNGTGCRRASQCTLSTLGSSKCAKALRIGLLLGVIVVGALVTAALSLVCYFANRRSTWLTKQLTVRRLLREAAGNYIVPLYPYKEVERATNFFSEKHRLGTGAYGTVYAGNLHNNELVAIKKIRYRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEKGEHILVYEYMPNGTLSQHLQRERGGTLPWTIRLTIASETANAVAFLHSSNPPIYHRDIKSSNILLDFSFQSKVADFGLSRLGMTEISHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFGRPQSEINLAALAVEKIRKGRVDDIIDPFLDLNRDAWTLYSVNKVAELAFRCLAFHSESRPSMIEVAEELDHIRRSGWATMEETICLGSSVGSGCSSPRYNGNENLVSKNEIPVVPQKTNSFLQTIEEVKDSSPESVHGTWSSRPSSPSTNSLLGNVVQ 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02523 665 Gene3D Phosphorylase Kinase; domain 1 284 380 - -
Vifa4g02523 665 Gene3D Transferase(Phosphotransferase) domain 1 381 591 - -
Vifa4g02523 665 FunFam Wall-associated receptor kinase-like 20 381 589 - -
Vifa4g02523 665 MobiDBLite consensus disorder prediction 639 665 - -
Vifa4g02523 665 ProSitePatterns Protein kinases ATP-binding region signature. 311 334 IPR017441 GO:0005524
Vifa4g02523 665 SMART serkin_6 305 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02523 665 FunFam Wall-associated receptor kinase-like 14 272 380 - -
Vifa4g02523 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Vifa4g02523 665 Pfam Protein kinase domain 306 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02523 665 SUPERFAMILY Protein kinase-like (PK-like) 287 576 IPR011009 -
Vifa4g02523 665 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 15 649 IPR044652 GO:0004672
Vifa4g02523 665 ProSiteProfiles Protein kinase domain profile. 305 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02523 665 CDD STKc_IRAK 311 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02523 Vifa-Chr4 764122233 764126150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02523 11 663 Receptor kinase-like Gene Family AT2G23450 52.374 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa4g02523 Pkinase 3.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02523 - - gmx:100810861 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07027 1 1086488894 1086492733 Vifa4g02523 4 764122233 764126150 PCT