Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02522 ATGAATGTATTTGATAAAGCTCCTTACGTTCATAAGGATGCGTTTATTGCTCCCAGTGCTTCCATTACCGGTGATGTTCAGATTGGCCGATCTTCTTCCATTTGGTATGGATGTGTTCTCAGAGGTGATGTTAACAGCATTTCTATTGGATCTTTAACTAATATACAAGACAATTCTCTTGTTCATGTTGCTAAGTCTAATTTGAGTGGAAAGGTATTACCTACTATCATTGGAGATAATGTTACTGTAGGTCACAGTGCTGTGTTACAAGGATGCACTGTTGAGGATGAGGCATTCATTGGTATGGGTGTAATCTTGCTTGATGGTGTGTATGTTGAGAAACATGCCATGGACGCTGCTGGAGCTCTTGTCAAGCAGCATACTAGGACCCACATTGTGAGAGAGGTCGAGAAGCCAGGATCTAAGCTTCACAAGAAGGAGACTTGTGAGCCTGTTACAATCATTGAGACTCCTCCAATGGTTGTTGTTGGTGTTATTGGTTATGTGAAGACTCCACGTGGTCTTCGTACATTGAACACTGTATGGACTCAGCATTTGAGTGAGGAAATTAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCAGCAAGTACTCAAAGCAGTATGAAAGTGATGAAGGCAAGAAGAACATTCAGACTCAGCTTGAGAAACGGAAGAATTATGCAACTGTTATCCGTGTGTTGGCTCACACTCAGATCAGGAAGATGAAGGGATTGAAGCAAAAGAAAGCCCATATTATGGAGATTCAGATTAACGGTGGCACTATTGCTCAGAAGGTTGACTTTGCATACAACTTCTTTGAGAAGCAGGTTCCTATTGATGCTGTGTTCCAGAAGGACGAAATGATTGACATCATTGGAGTGACAAAGAGTAATAGGGTTTTCTTCAACCCAATTTTGTGA 936 0.4145 MNVFDKAPYVHKDAFIAPSASITGDVQIGRSSSIWYGCVLRGDVNSISIGSLTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTVGHSAVLQGCTVEDEAFIGMGVILLDGVYVEKHAMDAAGALVKQHTRTHIVREVEKPGSKLHKKETCEPVTIIETPPMVVVGVIGYVKTPRGLRTLNTVWTQHLSEEIKRRFYKNWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKRKNYATVIRVLAHTQIRKMKGLKQKKAHIMEIQINGGTIAQKVDFAYNFFEKQVPIDAVFQKDEMIDIIGVTKSNRVFFNPIL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02522 311 SUPERFAMILY Translation proteins 122 301 IPR009000 -
Vifa4g02522 311 Gene3D - 159 282 - -
Vifa4g02522 311 Pfam Ribosomal protein L3 130 302 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vifa4g02522 311 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 125 302 IPR045077 GO:0003735|GO:0005840|GO:0006412
Vifa4g02522 311 Pfam Hexapeptide repeat of succinyl-transferase 74 106 IPR001451 -
Vifa4g02522 311 SUPERFAMILY Trimeric LpxA-like enzymes 3 127 IPR011004 -
Vifa4g02522 311 Gene3D Hexapeptide repeat proteins 1 151 - -
Vifa4g02522 311 FunFam 60S ribosomal protein L3 159 283 - -
Vifa4g02522 311 CDD LbH_gamma_CA_like 10 129 IPR047324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02522 Vifa-Chr4 763905970 763906905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02522 130 303 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 85.632 2.45e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02522 K02925 - gmx:100819132 310.457