Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02510 ATGTCACAAGATTATCAGCACCACCACCACCAGAGCCACCACCAACAAGGAATCTTTGGTTTCTCGAACGGGTTCGAGAGATCAAACACTCCGGTGGAAAACAACAGTCCACACCACCACCAACAACAGCAAATTCAAAGAAACAAAGTGGAACTCCAAGGCTTCGACTCACAACAACCTCTTCAACCACCACCACCGCAGTCGCTAATAGACAACATAGAAGAAGAACAAGAAGCTCTCCCGGTTTACGAAACAACCGGAATGTTGTCGGAAATGTTCAATTTCCCTCACGGTGCCTCATCCGCAGCTGAATTATTAGAACAGCAACAGCAAATGGCATCGACTGCGTCGTTCCGTTCGTCTTCGAGAACACCACCACCACCACCATCACATGGAATAGCCAATTCCAGTGACTGGTATGGAAACAGACAAACGATTTTAGCAGATTCGAAAAACCATCTTCATAATAACCGTGACAGCAGCACCAGCAGCAGCCTATTTCATCATCAGAATCATCATCAGATGTCAAACATTAATGCTGAGTCAGCAGCAGCCATGCAGCTTTTTCTGATGAATCCACAAACCAGATCTCCATCTCCTCCTCCACCTCAACCTCATCATCCTTCATCCACAAATTCATCCACTCTCCACATGTTACTTCCCAATCCTTCAACTAGTACTCTCCAAGGTTTTAATTCCGGAGCCGGAGGGTCTTTCGGTCAATTCACATGGGGACATGGAACTACTCAAGGAGGAGGAGCAGCAACAACAAATCATCACCAACTCAACAACAACAACAACAACCAACCTGAGATTGGAAGTGTTGTTGAAGGACAAGGTCTTTCATTGTCTTTATCTTCCTCCTTACAACACCACCACTCCGACGAATTACGAATGGGCGACGCTGCCGGATTTCTATATTACAATCAAGGAGGACCAGGACCAGGACAAGGACAAGGACCAGGACCGGGACCAGGACCTTCTTACAAGAATCTTCATCATCATCATCATTTACAAGGAGCTGGATTAGGACAAATTAGTCATATTCATCAGGGACATGTCGGATTCAGTTCCTCTTCTTCTTCGTCTTTAGGTGTTGTTAATGTTTTAAGAAATTCAAAGTATGTTAAAGCAGCTCAAGAATTACTTGAAGAATTTTGTAGTGTTGGAAGGGGTCAATTCAAGAAGAATAAATTCACTAGACAGTTATCAAACCCTAATTCAAATCAAGGTGGTGGTAGTCTTGGTGGTGGTGCTTCTTCATCCTCATCAAAAGATGTTTCACCTTTATCACCAGCTGATAGAATTGAGCATCAGAGAAGGAAGGTCAAACTTCTCACCATGCTTGACGAGGTGGATAGAAGATACAGTCATTACGGTGAACAAATGCAAATGGTGGTGAACTCATTTGATTTAGTGATGGGATTTGGCGCTGCGGTGCCATACACGGCGCTAGCGCAGAAAGCAATGTCGCGGCATTTTAGGTGTTTGAAGGATGCGATAACAGCGCAGTTGAAACATAGTTGTGAGTTATTGGGAGAGAAAGATGGTGTAGGGTCATCTGGTTTGACGAAAGGAGAGACGCCGAGGCTTAAGCTGCTTGAACAAAGCTTGAGACAGCAAAGAGCGTTTCATCAGATGGGAATGATGGAACAAGAAGCTTGGAGACCACAGAGAGGATTGCCTGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTTGAACATTTTCTTCATCCGTACCCAAGTGATGCAGATAAGCATCTCTTAGCAAGACAGACTGGCCTTTCCAGAAATCAGGTATCAAACTGGTTCATAAATGCCAGGGTTCGATTGTGGAAACCCATGGTAGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAAGGATCCTCAGAAGGTGAAGAAGATAGAGAGAACAAGAATCAAAGCAGTACTAGCAACACCAACAACAACACAAGTGGTCACATAGCTACTACAACAACAAATGCACAAACTCCAACACCTTCAACAACAACAGCATCTCCAACAACAACAACACCACAACCTACAAGCAACAACAACAATAATAAGAGATCCAATATTATGAATGCCAATATTGAAAACGACCCTTCACTTACACCAATAATAAATAGACAAGGCTTCTCGGAAAACCAAGCAATATTGTTACAACAACAATCAACCACCAAAACCACCGTCTCTCAAGTTGCGCCACCTATCTCCGATTCTATGGCCATTGATGACACGTGTCGACATGGCAGCTTTGTTACAGCTGAATATGGGACCACACCTGCTTCTTCTTCTGACAATATTATCAGATTTGGGACCACTACCTCTGGTGACGTGTCACTAACTTTAGGGCTACGTCACGCCGGAAATTTGCCCGACAAAACATCTTTCTCTCTTACAGACTTTGGAGGCATTTAA 2427 0.438 MSQDYQHHHHQSHHQQGIFGFSNGFERSNTPVENNSPHHHQQQQIQRNKVELQGFDSQQPLQPPPPQSLIDNIEEEQEALPVYETTGMLSEMFNFPHGASSAAELLEQQQQMASTASFRSSSRTPPPPPSHGIANSSDWYGNRQTILADSKNHLHNNRDSSTSSSLFHHQNHHQMSNINAESAAAMQLFLMNPQTRSPSPPPPQPHHPSSTNSSTLHMLLPNPSTSTLQGFNSGAGGSFGQFTWGHGTTQGGGAATTNHHQLNNNNNNQPEIGSVVEGQGLSLSLSSSLQHHHSDELRMGDAAGFLYYNQGGPGPGQGQGPGPGPGPSYKNLHHHHHLQGAGLGQISHIHQGHVGFSSSSSSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFTRQLSNPNSNQGGGSLGGGASSSSSKDVSPLSPADRIEHQRRKVKLLTMLDEVDRRYSHYGEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGVGSSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGSSEGEEDRENKNQSSTSNTNNNTSGHIATTTTNAQTPTPSTTTASPTTTTPQPTSNNNNNKRSNIMNANIENDPSLTPIINRQGFSENQAILLQQQSTTKTTVSQVAPPISDSMAIDDTCRHGSFVTAEYGTTPASSSDNIIRFGTTTSGDVSLTLGLRHAGNLPDKTSFSLTDFGGI 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02510 808 CDD homeodomain 555 616 IPR001356 GO:0003677
Vifa4g02510 808 MobiDBLite consensus disorder prediction 107 139 - -
Vifa4g02510 808 MobiDBLite consensus disorder prediction 1 47 - -
Vifa4g02510 808 SMART prehox3 364 503 IPR006563 -
Vifa4g02510 808 MobiDBLite consensus disorder prediction 15 47 - -
Vifa4g02510 808 MobiDBLite consensus disorder prediction 401 436 - -
Vifa4g02510 808 MobiDBLite consensus disorder prediction 625 642 - -
Vifa4g02510 808 MobiDBLite consensus disorder prediction 643 708 - -
Vifa4g02510 808 FunFam BEL1-like homeodomain protein 4 558 620 - -
Vifa4g02510 808 MobiDBLite consensus disorder prediction 308 334 - -
Vifa4g02510 808 Pfam Homeobox KN domain 572 611 IPR008422 GO:0003677|GO:0006355
Vifa4g02510 808 Gene3D - 558 620 - -
Vifa4g02510 808 ProSiteProfiles 'Homeobox' domain profile. 552 615 IPR001356 GO:0003677
Vifa4g02510 808 SUPERFAMILY Homeodomain-like 557 622 IPR009057 -
Vifa4g02510 808 MobiDBLite consensus disorder prediction 107 121 - -
Vifa4g02510 808 Pfam Associated with HOX 369 502 IPR006563 -
Vifa4g02510 808 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 212 645 - -
Vifa4g02510 808 SMART HOX_1 555 619 IPR001356 GO:0003677
Vifa4g02510 808 MobiDBLite consensus disorder prediction 192 273 - -
Vifa4g02510 808 MobiDBLite consensus disorder prediction 209 273 - -
Vifa4g02510 808 MobiDBLite consensus disorder prediction 625 708 - -
Vifa4g02510 808 MobiDBLite consensus disorder prediction 401 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02510 Vifa-Chr4 759820064 759826404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02510 770 808 Homeobox Transcription Factor Family AT2G23760 72.500 5.26e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vifa4g02510 POX 1.4e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02510 - - mtr:11411247 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02510 4 759820064 759826404 Vifa4g02510 4 759820064 759826404 ECH
Vifa4g02510 4 759820064 759826404 Vifa1g06993 1 1080931418 1080937194 ECH
Vifa1g06993 1 1080931418 1080937194 Vifa4g02510 4 759820064 759826404 PCT