Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02507 ATGGTTTCTTCCTTCATTTCACTTCACTCACTATTTCTCGCACTTATGTTCTTTTCTGCCAATGGAACAAACCTCACATGCCCTATGAATTCCTCTCTTCCCTGTGACACATATGTTGCATACTTGGCTCACTTTCCAAATTTTTTAACCCTCACAACCATATCTGATATATTTGACACCACTCCACAATCCATTGCAAGAGCAAGTAGCATAAAAGATGAAAATATGAACCTTGTTCCAGGCCAACTTTTGCTAATACCTATAACTTGTGGCTGCACTGGAAATGGAAACTACTCTTTTGCTAATATCTCACACTTGATCAAACAAGGTGAAAGTTACTACTATCTTTCAACCATTTCATATCAGAATCTCACCAATTGGATGACAGTGGAAGATTCAAATCCTAACCTGAATCCATATTTGTTGACGGTGGGCACCAAAATAGTCATTCCTTTGTTCTGTAGGTGCCCTTCAAAAGGGATAGAGTCTTTGATTACATATGTTTGGCGGCCTAATGACAATCTTACCCTTGTAGCTTCCAAGTTTGGTGCATCACAACATGACATAATCACTGCAAATGCAAACAATTTTGGCCAGAATTTTACTTCCGCAACCAACCTTCCAGTTTTTATCCCAGTGAAAAGCTTACCAGCTATTTCACAATTACACTATTCTTCAAGTGGAAGAAAGAAAAACAATCATTTTCCTATTATCATTTTCATTGGTATATGTCTAGGATGCACTATTCTGATTTCACTGTCATTACTAGTTTATGTGTATTGTTTGAGGAAGAGAAAAGCTTGTGAGAATAAGTGTGTGCCTTCTGTGGAGATAACAGATAAGTTAATTTCAGAAGTTTCAAACTACGTAAGTAAGCCAAAAGTGTATCAAGCTGGTATGATTATGGAAGCTACAATGAACTTCAATGAACAGTGTAGGATAGGGAAATCCGTGTACAAAGCTAAAATCGACGGTCGTGTTTTAGCTGTGAAAAACGTCAAGGAAGACATCACAGTCACAGAAGAGTTGATGATTCTTCAAAAGGTAAATCATGCGAATCTTGTTAAACTAATTGGTGTTTCTTCAGGATACGTTGGAAATCACTTTCTTGTATATGAATACGCTGAAAATGGATCACTTTATAATTGGCTGTTCTCTGAATTTTCCACTGCTTCGAGCTCAGTGATTTCCCTCACATGGAATCAGAGGTTAAGCATAGCAATTGATGTTGCAATTGGTCTGCAATACATGCATGAACACATAGAACCAAGCATAGTCCATAGAGACATCACATCAAGTAACATCCTTCTCGACTCAAACTTTAAGGCCAAGATATCAAATTTTTCTGTTGCAAAAACTACAAAGAATCCTATGATAACAAAAGTAGATGTTTTCGCTTACGGGGTGGTCCTGTTAGAGTTATTAACAGGAAAGAACAGCGAGGTGAATACGTTATGGAAAGATATTAAGGGTGTGTTTGATATAGAAGAGAAGAACGAGGAAAGGGTTAGAAGATGGATTGATCCCAAGTTGGGGAGGTTTTTTAATGTTGTTGAAGCTCTTAGTTTGTTCTCTTTGGCAGTGAATTGCATTGAAGAACAATCTTTGTTAAGACCAACTATGGGAGAAGTTGTTCTTAGCCTTTCCCTTCTCACTCAACATTCTCCTACTTTGTTAGAGAGGTCTTGTACTTATGGATCAGATGTTGAGGTTGTAACTGAAATAATCATAGCTCGTTGA 1740 0.3747 MVSSFISLHSLFLALMFFSANGTNLTCPMNSSLPCDTYVAYLAHFPNFLTLTTISDIFDTTPQSIARASSIKDENMNLVPGQLLLIPITCGCTGNGNYSFANISHLIKQGESYYYLSTISYQNLTNWMTVEDSNPNLNPYLLTVGTKIVIPLFCRCPSKGIESLITYVWRPNDNLTLVASKFGASQHDIITANANNFGQNFTSATNLPVFIPVKSLPAISQLHYSSSGRKKNNHFPIIIFIGICLGCTILISLSLLVYVYCLRKRKACENKCVPSVEITDKLISEVSNYVSKPKVYQAGMIMEATMNFNEQCRIGKSVYKAKIDGRVLAVKNVKEDITVTEELMILQKVNHANLVKLIGVSSGYVGNHFLVYEYAENGSLYNWLFSEFSTASSSVISLTWNQRLSIAIDVAIGLQYMHEHIEPSIVHRDITSSNILLDSNFKAKISNFSVAKTTKNPMITKVDVFAYGVVLLELLTGKNSEVNTLWKDIKGVFDIEEKNEERVRRWIDPKLGRFFNVVEALSLFSLAVNCIEEQSLLRPTMGEVVLSLSLLTQHSPTLLERSCTYGSDVEVVTEIIIAR 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02507 579 Gene3D Transferase(Phosphotransferase) domain 1 457 564 - -
Vifa4g02507 579 Gene3D Transferase(Phosphotransferase) domain 1 375 456 - -
Vifa4g02507 579 Pfam Protein tyrosine and serine/threonine kinase 328 455 IPR001245 GO:0004672|GO:0006468
Vifa4g02507 579 ProSiteProfiles Protein kinase domain profile. 290 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02507 579 SUPERFAMILY Protein kinase-like (PK-like) 289 559 IPR011009 -
Vifa4g02507 579 Pfam LysM domain 50 87 IPR018392 -
Vifa4g02507 579 Pfam LysM domain 107 151 IPR018392 -
Vifa4g02507 579 ProSitePatterns Tyrosine protein kinases specific active-site signature. 425 437 IPR008266 GO:0004672|GO:0006468
Vifa4g02507 579 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 21 555 - -
Vifa4g02507 579 Gene3D Phosphorylase Kinase; domain 1 280 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02507 Vifa-Chr4 756824637 756826376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02507 69 551 Receptor kinase-like Gene Family AT3G21630 30.270 1.86e-60 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa4g02507 PK_Tyr_Ser-Thr 3.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02507 - - vra:106777834 641.343