Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02494 ATGGGGACTAAGGAGGATAGTACAACTAAGCCTTCTAAATTATCTACTTCAACTCAAGAAGTACCGGTACCTACTGTACCGCCATCGTATCCAGATTGGTCAAACTCCATGCAGGCCTACTATAATCCTGGAGCTGCTCCGCCTCCTTATTATGCCTCGACTGTTGCTTCACCGACCCCCCATCCGTATATGTGGGGAGGTCAGCATCCTTTAATGGCGCCATATGGTACTCCAGTTCCGTATCCAGCTATGTACCCTCCTGGGAGTATCTATGCTCATCCTAGCATGGTAGTGACTCCGGGTACTATGCACCAAACTACGGAGTTTGAAGGGAAGGGACCTGATGGAAAGGATAAGGATTCATCGAAAAAATCAAAGGGAAATTCTGCAAATGCATGTGCCAAAGCAGGAGAGAGTGGAAAGGCAGGCTCGGGTTCAGGCAACGATGGCTTTTCACAAAGTGGTGAAAGTGGTTCAGAGGGTTCATCAAATGGTAGTGACGAGAACCAACAGGAATCAGTTAGAAACAAGAAGGGAGGTTTTGACCTCATGCTTGTTGATGGAGCCAATGCACAGAACAATACCGCCGGACCCATTTCTCAATCACCTGTTCCTGGAAACCCTGTTGTCTCGATGCCTGCAACTAATCTTAATATGGGAATGGATTTATGGAATGCATCTTCTGCTAGTGCTGAAGCCGCAAAAATGCGACACAATCAATCTGGTGCTCATGGAGCCAGTGGACATGGTGAACAATGGATGCAACAGGATGACCGTGAGCTGAAAAGGCAGAAGAGAAAACAGTCGAATCGGGAGTCGGCTAGGAGGTCAAGACTGCGCAAGCAGGCTGAATGTGAAGAGCTACAAAAGAGGGTGGAGGCGCTCGGAGGTGAGAATCGAACTCTTAGAGACGAGCTTCAGAAACTTTCTGAAGAATGCGAAAAGCTTACATCTGAAAACAATTCTATCAAGGAAGAGTTGGAACGGTTATGCGGGCCAGAAGTAGTTGCTAACCTTGAATGA 1023 0.4741 MGTKEDSTTKPSKLSTSTQEVPVPTVPPSYPDWSNSMQAYYNPGAAPPPYYASTVASPTPHPYMWGGQHPLMAPYGTPVPYPAMYPPGSIYAHPSMVVTPGTMHQTTEFEGKGPDGKDKDSSKKSKGNSANACAKAGESGKAGSGSGNDGFSQSGESGSEGSSNGSDENQQESVRNKKGGFDLMLVDGANAQNNTAGPISQSPVPGNPVVSMPATNLNMGMDLWNASSASAEAAKMRHNQSGAHGASGHGEQWMQQDDRELKRQKRKQSNRESARRSRLRKQAECEELQKRVEALGGENRTLRDELQKLSEECEKLTSENNSIKEELERLCGPEVVANLE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02494 340 Coils Coil 271 326 - -
Vifa4g02494 340 MobiDBLite consensus disorder prediction 188 213 - -
Vifa4g02494 340 SMART brlzneu 258 322 IPR004827 GO:0003700|GO:0006355
Vifa4g02494 340 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 335 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vifa4g02494 340 MobiDBLite consensus disorder prediction 1 29 - -
Vifa4g02494 340 FunFam BZIP transcription factor 260 311 - -
Vifa4g02494 340 MobiDBLite consensus disorder prediction 253 267 - -
Vifa4g02494 340 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 260 323 IPR004827 GO:0003700|GO:0006355
Vifa4g02494 340 CDD bZIP_plant_GBF1 263 313 IPR045314 GO:0003700|GO:0006355
Vifa4g02494 340 MobiDBLite consensus disorder prediction 229 283 - -
Vifa4g02494 340 Pfam bZIP transcription factor 259 320 IPR004827 GO:0003700|GO:0006355
Vifa4g02494 340 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 265 280 IPR004827 GO:0003700|GO:0006355
Vifa4g02494 340 Gene3D - 261 315 - -
Vifa4g02494 340 MobiDBLite consensus disorder prediction 1 23 - -
Vifa4g02494 340 MobiDBLite consensus disorder prediction 110 125 - -
Vifa4g02494 340 MobiDBLite consensus disorder prediction 145 170 - -
Vifa4g02494 340 MobiDBLite consensus disorder prediction 105 213 - -
Vifa4g02494 340 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Vifa4g02494 340 SUPERFAMILY Leucine zipper domain 261 317 IPR046347 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02494 1 340 bZIP Transcription Factor Family AT4G36730 53.602 1.40e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa4g02494 MFMR 6.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02494 K09060 - gmx:778191 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02494 4 752399506 752402344 Vifa4g02494 4 752399506 752402344 ECH