Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02493 ATGAGAGTTCCTCCTCCTGCAGTTTCCTCATCATCATCATCATCCCCAAAACTGACCACCACCCAAAACACCATCCTCACCACCACTCCCAACCCAACAACAACCACCACAACCACCACAACCACCTTGTGCTACGAGCCCCGCTCCGTTCTCGAACTCTGCCGTAGTCCTAGCCCTGAAAAGAAACCAACTCAACAACAACTACAAGAACAAGAACATCTGGAAGTGGAAGAGGATCATGCAGCCTTGCCTAATTTGGATTGGTGGGACTCCATCATGAAGGATTTGGGTTTACAAGACGACTCTTCCACACCCATAATACCACTTTTGAAAAACACCAACAACACCCACGAAAATTCTAACCCAACACCATGCATCCCTGAAATTTACCCAAACCCTTCTCAAGACCAATTCGATCAAACTCAAGATTTCACTTCTCTCTCAGATATTTACTCTAACAACCAAAACCTCCCCTATAACTACCCAAACACAAACACTAATCTGGACCATTTACTTCATGACTTCAATAACAACCAACACACCAACAATAATAACAACAATAGTAACTGGGATTTCATCGAAGAACTTATTCGCGCCGCTGATTGTTTCGATAACAATCATCTACAACTAGCTCAGGCCATATTGGAGAGACTCAATCAACGCCTCCGATCTCCCTCCGGTAAACCGTTACACCGAGCAGCGTTTCATTTCAAAGACGCTCTTCAATCTCTTCTCTCCGGTTCAAACCGGACCAATCCTCCGCGTCTTTCTTCCATGGTGGAGATTGTTCAGACCATTAGAACGTTCAAGGCGTTTTCTGGAATTTCACCGATTCCTATGTTTTCTATTTTTACCACTAATCAAGCTTTGCTTGAAGCGCTTCATGGATCATCGTTCATGCATGTTGTTGATTTTGAAATCGGACTTGGAATTCAATATGCTTCTCTGATGAAAGAGATTGCTGAAAAGGCTGTTAACGCTTCGCCGCTTCTCCGAATCACTGCGGTGGTGCCGGAGGAGTATGCTGTTGAAAGCAGGCTTATTCGTGAGAACCTGAACCAGTTTGCGCATGATCTTGGGATTCGCGTGCAGGTTGATTTTGTGCCGTTGAGGACTTTTGAAACGGTGTCGTTTAAGGCGGTTAGGTTCGTCGACGGTGAGAAGTCTGCGATTCTGTTGACTCCGGCGATATTCTGTCGCCTTGGATCCGATGGTACAGCCGCGTTTCTCTCGGATGTTCGGAGGATAACTCCAGGTGTGGTGGTTTTTGTTGATGGTGAAGGATGGACGGAGGCGGCTGCAGCGGCGTCGTTTCGTCGTGGAGTTGTGAATAGCTTGGAGTTCTACTCGATGATGCTGGAGTCGCTGGATGCATCCGTGGCGGCGGGAGGAGGAGGAGAGTGGGCGCGGAGGATTGAGATGCTTCTTCTACGGCCCAAGATAATTGCGGCGGTGGAAGCTGCCGGAAGAAGAACGACGCCGTGGAGAGAGGCGTTTTACGGTGCCGGAATGAGGCCGGTGCAGTTGAGTCAATTTGCTGATTTTCAGGCGGAGTGCTTGCTAGCAAAGGTGCAAATCAGAGGCTTCCACGTGGCAAAACGACAAGCTGAGTTGGTGCTTTTCTGGCATGAGAGGGCCATGGTTGCCACGTCAGCTTGGCGGTGTTAG 1668 0.4838 MRVPPPAVSSSSSSSPKLTTTQNTILTTTPNPTTTTTTTTTTLCYEPRSVLELCRSPSPEKKPTQQQLQEQEHLEVEEDHAALPNLDWWDSIMKDLGLQDDSSTPIIPLLKNTNNTHENSNPTPCIPEIYPNPSQDQFDQTQDFTSLSDIYSNNQNLPYNYPNTNTNLDHLLHDFNNNQHTNNNNNNSNWDFIEELIRAADCFDNNHLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDALQSLLSGSNRTNPPRLSSMVEIVQTIRTFKAFSGISPIPMFSIFTTNQALLEALHGSSFMHVVDFEIGLGIQYASLMKEIAEKAVNASPLLRITAVVPEEYAVESRLIRENLNQFAHDLGIRVQVDFVPLRTFETVSFKAVRFVDGEKSAILLTPAIFCRLGSDGTAAFLSDVRRITPGVVVFVDGEGWTEAAAAASFRRGVVNSLEFYSMMLESLDASVAAGGGGEWARRIEMLLLRPKIIAAVEAAGRRTTPWREAFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWRC 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02493 555 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 172 549 IPR005202 -
Vifa4g02493 555 ProSiteProfiles GRAS family profile. 183 554 IPR005202 -
Vifa4g02493 555 Pfam GRAS domain family 193 554 IPR005202 -
Vifa4g02493 555 MobiDBLite consensus disorder prediction 55 74 - -
Vifa4g02493 555 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02493 Vifa-Chr4 752155820 752157487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02493 73 554 GRAS Transcription Factor Family AT4G36710 54.990 7.00e-166 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa4g02493 GRAS 4.7e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02493 - - cam:101510420 909.827