Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02487 ATGGTTGATTTAGACAATGTTTCTACACCTTCAGGAGAAGCTGAAGCTAGCATCTCTTCCTCTGGTAACAATAACAACCAAACAACCCCTCCAAAACCCACTAAGAAAAAACGAAACCTCCCCGGAATGCCAGATCCGGAAGCAGAGGTGATAGCTTTGTCTCCGACTACTCTGTTAGCGACGAATAGATTTGTGTGTGAAATATGTAACAAAGGTTTTCAGAGGGATCAGAATCTTCAACTTCATAGGAGAGGTCATAATCTGCCGTGGAAACTGAGGCAGAGGTCGAGTAAGGAAGTTAGGAAGAGGGTTTATGTGTGTCCTGAGCCGACTTGTGTTCATCATGATCCTTCTAGAGCTTTGGGCGATCTAACGGGGATTAAAAAGCACTTCTGTAGAAAACACGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCGAAGAAATACGCTGTTCAATCGGATTGGAAAGCGCACTCGAAAGTTTGTGGTTCTAGAGAGTATAAATGCGATTGTGGAACCGTTTTTTCCAGGAGGGATAGTTTCATAACGCATAGAGCTTTTTGTGACGCGTTGGCAGAGGAAAATGCGAAATCTCAGACTCAACCGGTTGTGAAAGCTAGTTCAGAATCTGATTCAAAGGTTTTGACCGGAGATTCATTGCCTCAACCACCGCCGCCGCTTCCGTTGCCGCCTGTGGTGACTAGTACTACCACGGTGGTTACAACTCCTCAGTCAAATAGTGGTGTGTCCTCTGCTTTGGAGACTCAGAAGCTAGATTTACCAGAAAATCCCCCTCAAATCATAGAGGAGACACAACCACAACCACAGCCGGTTGTTGTTGCTACTACTACTTTAAATGCGAGTGGTAGTAGCAGCAGTACTAGCTCAACCGGCAATGGTCATCCTGCTTCTAGCAGTGGTGTGTTTGCAAGTTTGTTTGCATCTTCCACAGCGTCAACTTCTGCAAGTCTACAATCTCAAACACCAGCCTTCACTGATTTAATTAGGTCCATGGGATGTCCAGATGCTCGCCCTACTGATTTCTCAACTCCTCCATCATCCGAGGCCATATCCCTTTGCCTCTCTACCAATCACGGATCATCCATTTTCGGAGCAGGAGGCCAGGAGTGCCGCCAGTATGTGCCTACACATCAGCCGCCTGCTATGTCAGCCACTGCATTACTTCAGAAAGCTGCTCAAATGGGCGCTGCAGCAACAAATGCCTCTTTGCTTCGCGGGCTTGGAATCGTGTCGTCTTCCGCTTCCACTTCAACGGGTCAGCAAGATAGCCTTCATTGGGGTCTCGGACCAGTGGAACAGGAGAGTGCTGGTTTAGTCCATGCGGGACTTGGACTAGGTATTCCTTGTGACAGTGACTCTGGACTAAAGGAATTGATGTTGGGGACTCCATCGTTGTTTGGTCCTAAGCAAACAACTCTTGATTTTCTAGGATTGGGGATGGCTGCAGGTGGCAGCGCCGGTGGAGGCTTATCAGCACTTATCACATCAATCGGCGGCAGCAGCGGTTTGGACGTTACTACAGCAGCTGCATCTTTCGGTAACGGAGAATACTCCGGCAAAGATATTGGTAGAAGCTCCTGA 1602 0.4775 MVDLDNVSTPSGEAEASISSSGNNNNQTTPPKPTKKKRNLPGMPDPEAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGSREYKCDCGTVFSRRDSFITHRAFCDALAEENAKSQTQPVVKASSESDSKVLTGDSLPQPPPPLPLPPVVTSTTTVVTTPQSNSGVSSALETQKLDLPENPPQIIEETQPQPQPVVVATTTLNASGSSSSTSSTGNGHPASSSGVFASLFASSTASTSASLQSQTPAFTDLIRSMGCPDARPTDFSTPPSSEAISLCLSTNHGSSIFGAGGQECRQYVPTHQPPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASTSTGQQDSLHWGLGPVEQESAGLVHAGLGLGIPCDSDSGLKELMLGTPSLFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGSSGLDVTTAAASFGNGEYSGKDIGRSS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02487 533 MobiDBLite consensus disorder prediction 233 251 - -
Vifa4g02487 533 MobiDBLite consensus disorder prediction 1 47 - -
Vifa4g02487 533 MobiDBLite consensus disorder prediction 198 217 - -
Vifa4g02487 533 MobiDBLite consensus disorder prediction 10 34 - -
Vifa4g02487 533 MobiDBLite consensus disorder prediction 198 251 - -
Vifa4g02487 533 SMART c2h2final6 64 86 IPR013087 -
Vifa4g02487 533 SMART c2h2final6 105 135 IPR013087 -
Vifa4g02487 533 SMART c2h2final6 140 160 IPR013087 -
Vifa4g02487 533 Gene3D Classic Zinc Finger 44 110 - -
Vifa4g02487 533 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Vifa4g02487 533 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 491 IPR031140 -
Vifa4g02487 533 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Vifa4g02487 533 Pfam Zinc finger, C2H2 type 64 86 IPR013087 -
Vifa4g02487 533 Gene3D Classic Zinc Finger 118 199 - -
Vifa4g02487 533 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Vifa4g02487 533 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Vifa4g02487 533 FunFam protein indeterminate-domain 12-like 43 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02487 Vifa-Chr4 749624868 749627261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02487 2 531 IDZ Gene Family AT3G50700 54.699 3.33e-176 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa4g02487 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02487 K25869 - gmx:100806404 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02487 4 749624868 749627261 Vifa4g02487 4 749624868 749627261 ECH