Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02479 ATGTCACACAACTCTTCACCTGATAATGCCACACCTGATAATGCTACTCCTGATGATGCTGATGGATCATCTTCACGGCAAAAATCATCGCCTTCTGGAGAAGGAAACAAGGCAGTTTCATCAAATGATAAATCTTCCAACCGCAGTCACCATAAGGGTGATGACCAATCGATAATAGTTGGAGCTGCTATTGGATCTGCATTGTTCGTTCTTCTCTTCGTTGGCATCTGTTTCCTTTGTTGTAGGAAGAAGAAGAGAAACCAAAATTACTATTATGGTCCTGGTCCTCATGGAGATCCTTCCCTTGCAAAAGACTACTTATTTCGTACTTCAGAGCAGGATTATTCATCACAATGGAGTAGTTACTACCACAGTGGACAACATCCTCATCCAAATTGGCAAGGAGGTCCAGTTTCAGGTCCACATGGAATGGAACATGTAGTTAGAGTTCAACAACATACACCAAATGGAAGTGGAGTTTGGGGTGCACCACATCCTATGATGAATAGCGGCGAAATGAGTGGAAACTATTCGTTTGGAATGGGTCCGCCGGGCGCTTTGCCTCCTCCTTCTCCAGGCCTATCGCTTACTCTCAAGGGAGGTACATTCTCTTATGAGGAATTGGCATCGGCGACTAAAGGTTTCGCTAATGAGAATATTATAGGACAAGGTGGTTTTGGTTATGTTCATAAGGGAATATTGCCTAATGGAAAGGAAATTGCTGTCAAAAGTTTGAAAGCGGGTAGTGGACAAGGCGAACGTGAGTTCCAAGCTGAGATTGATATTATTAGCCGTGTTCATCATCGTCATCTTGTTTCTCTTGTTGGATATTGTGTTTGTGGTGGACAAAGAATGTTGGTCTATGAATTTGTTCCGAATCAAACATTGGAATATCATCTTCATGGAAAGAGTGTGCCTACCATGGATTGGCCTACTAGAATGAAAATTGCACTAGGATCTGCTAGAGGGCTTGCTTACCTTCATGAAGATTGTAGTCCTCGCATTATTCACCGTGATATTAAGGCTTCTAATGTTCTAATTGATGATAGCTTCGAAGCCAAGGTGGCTGATTTTGGATTGGCTAAGTTGACTACCGATACTAATACACACGTCTCAACTCGTGTTATGGGAACATTCGGGTATATGGCACCGGAATATGCATCTAGTGGAAAACTGACAGAGAAATCTGATGTTTTCTCATTTGGAGTCATGCTACTAGAACTCTTAACCGGGAAGAGACCTTTGGATTTAAGCAATGCCATGGACGAAAGTTTAGTTGACTGGGCTCGACCACTCTTGAGTCAAGCATTGGAAGAGGATGGAAACTTCAAAGAGTTGATAGATCCATTTTTGGAAGGAAACTACAACAATCAAGAAATGATAAGAATGGCAGCTTGCGCTTCTAGTAGCATTCGTCATTCCGCTAAGAAGCGTTCAAAAATGAGCCAGATAGTAAGAGCATTAGAAGGAGATGTGTCACTAGAGGATTTGAAGGAAAGTATGATTAAAGCTTCAGGCCATAGCAGTGTTTATACTTCTTCAGGCTCAGAATATGATACAATGCAATACAATGCTGATATGGTGAAGTTTAGACAAGCAATAATGTCAAGTCAAGAATTTCCTGATAGCGGCCAGATCACTAGTAAAGAGATGGGTCGTCACTAG 1665 0.4186 MSHNSSPDNATPDNATPDDADGSSSRQKSSPSGEGNKAVSSNDKSSNRSHHKGDDQSIIVGAAIGSALFVLLFVGICFLCCRKKKRNQNYYYGPGPHGDPSLAKDYLFRTSEQDYSSQWSSYYHSGQHPHPNWQGGPVSGPHGMEHVVRVQQHTPNGSGVWGAPHPMMNSGEMSGNYSFGMGPPGALPPPSPGLSLTLKGGTFSYEELASATKGFANENIIGQGGFGYVHKGILPNGKEIAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYCVCGGQRMLVYEFVPNQTLEYHLHGKSVPTMDWPTRMKIALGSARGLAYLHEDCSPRIIHRDIKASNVLIDDSFEAKVADFGLAKLTTDTNTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELLTGKRPLDLSNAMDESLVDWARPLLSQALEEDGNFKELIDPFLEGNYNNQEMIRMAACASSSIRHSAKKRSKMSQIVRALEGDVSLEDLKESMIKASGHSSVYTSSGSEYDTMQYNADMVKFRQAIMSSQEFPDSGQITSKEMGRH 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02479 554 FunFam proline-rich receptor-like protein kinase PERK1 193 290 - -
Vifa4g02479 554 Gene3D Transferase(Phosphotransferase) domain 1 291 507 - -
Vifa4g02479 554 MobiDBLite consensus disorder prediction 1 53 - -
Vifa4g02479 554 FunFam Proline-rich receptor-like protein kinase PERK1 291 499 - -
Vifa4g02479 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Vifa4g02479 554 MobiDBLite consensus disorder prediction 1 43 - -
Vifa4g02479 554 ProSiteProfiles Protein kinase domain profile. 215 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02479 554 SMART serkin_6 215 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02479 554 ProSitePatterns Protein kinases ATP-binding region signature. 221 243 IPR017441 GO:0005524
Vifa4g02479 554 SUPERFAMILY Protein kinase-like (PK-like) 196 488 IPR011009 -
Vifa4g02479 554 Gene3D Phosphorylase Kinase; domain 1 195 290 - -
Vifa4g02479 554 Pfam Protein tyrosine and serine/threonine kinase 218 416 IPR001245 GO:0004672|GO:0006468
Vifa4g02479 554 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 68 533 IPR047117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02479 Vifa-Chr4 746768805 746771580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02479 59 544 Trihelix Transcription Factor Family AT1G70460 48.057 1.04e-141 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa4g02479 PK_Tyr_Ser-Thr 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02479 - - gmx:100805872 730.324