Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02474 ATGTCTAATAATCCACTCTTGACTTGGTGTTTTCTTTCTTTCATTCTTGCTCTCACTTTGTTCTTCTTTTTCATCCAAAGAAAGAAAACAAAGTTTTATCTTCCACCTGGAAAAATGGGGTGGCCCTTTATTGGAGAAACCATTGGTTTTTTGAAGCCTTACTCCGCCACTACAATGGGAGAATTTATGGAGAATCACATAGCAAGGTATGGTACAATTTACAAGTCAAACTTGTTTGGAGAACCTGCAATTGTATCAGCAGATGCAGAGTTCAATAAGTTCATATTACAAAATGATGGGAAATTGTTTGAGGTTAGTTATCCTAGAAGCATTGGTGGAATACTTGGGAAATGGTCAATGTTGGTTTTAGTAGGTGACATGCATAGAGACATGAGGAATATTTCACTCAATTTTATGAGCCATGTTAGGCTTAAAACACATTTTTTGAAAGATATGGAGAATCATACCCTTTTGGTTTTAAGCTCTTGGAAAAATAATTGTACATTTTCAGTTCAAAGTGAAGCAAAAAAGTTCACCTTCAATTTAATGGCAAAACAAATTATGAGTTTGGATCCATGGAATCTTGAGACAGACGAGTTGAAAAAAGAGTATGTCTCTTTTATGAAAGGTGTTGTTTCTGCTCCTTTGAATTTGCCAGGAACGGCTTACAGAAAGGCATTAAAGTCTAGGAACAGCATATTGAAGTTCATAGAGAGAAAAATGGAAGAAAGAATGAAAAGAATGCAAGAGGGAAAAAAAGGGTTGGAAGAAAATGATCTCTTGAATTGGGTTCTGAAGCATTCAAATCTTTCTACTGAACAAATTCTTGACTTGATTCTGAGTTTGCTTTTTGCTGGTCATGAAACATCATCTGTAGCTATATCTCTAGCCATCTACTTTTTGCCTGGTTGTCCTCAAGCTATGCAACAATTAAGGGAAGAACATAGAGAAATTGCTCGGTGTAAAAAGAAAGCAGGAGTGGTTGAATTAACTTGGGATGATTACAAAAAAATGGAATTTACTCATTGTGTTGTGAATGAAACACTAAGATTGGGAAATATTGTGAGGTTCCTCCATAGGAAGGCTATCAAAGATGTTTGGTACAAAGGTTATGACATTCCATGTGGATGGAAAGTTCTTCCAGTGATTTCAGCGGTGCATTTAAATCCTTCAAATTTTGACCAACCTCAACACTTCAATCCTTGGAGATGGCAGTGCAATAGTAAAAATGGAAATTGTGGAAACACAAACAGTAGTAACTTTATGTCATTTGGAGGAGGACCAAGGCTATGTGCAGGATCAGAGTTGGCTAAACTTGAAATGGCAGTTTTCATACACCATATTATCCTAAACTATAATTGGGAGCTAGTTGATGTTGTTGATCAACCTATTGCATACCCTTTTGTTGAGTTTCCTAAAGGTCTACAAATCAGAGTCCAAACTCTAGCCCAAGCCCAAGCCCAAGCCCAATCTGTAATATGA 1482 0.3657 MSNNPLLTWCFLSFILALTLFFFFIQRKKTKFYLPPGKMGWPFIGETIGFLKPYSATTMGEFMENHIARYGTIYKSNLFGEPAIVSADAEFNKFILQNDGKLFEVSYPRSIGGILGKWSMLVLVGDMHRDMRNISLNFMSHVRLKTHFLKDMENHTLLVLSSWKNNCTFSVQSEAKKFTFNLMAKQIMSLDPWNLETDELKKEYVSFMKGVVSAPLNLPGTAYRKALKSRNSILKFIERKMEERMKRMQEGKKGLEENDLLNWVLKHSNLSTEQILDLILSLLFAGHETSSVAISLAIYFLPGCPQAMQQLREEHREIARCKKKAGVVELTWDDYKKMEFTHCVVNETLRLGNIVRFLHRKAIKDVWYKGYDIPCGWKVLPVISAVHLNPSNFDQPQHFNPWRWQCNSKNGNCGNTNSSNFMSFGGGPRLCAGSELAKLEMAVFIHHIILNYNWELVDVVDQPIAYPFVEFPKGLQIRVQTLAQAQAQAQSVI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02474 493 SUPERFAMILY Cytochrome P450 31 479 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 PRINTS E-class P450 group I signature 421 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 PRINTS E-class P450 group I signature 431 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 PRINTS E-class P450 group I signature 274 291 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 PRINTS E-class P450 group I signature 382 406 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 PRINTS E-class P450 group I signature 294 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 PRINTS E-class P450 group I signature 342 360 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 PANTHER CYTOCHROME P450 26 31 463 - -
Vifa4g02474 493 Coils Coil 238 258 - -
Vifa4g02474 493 CDD CYP90-like 66 479 - -
Vifa4g02474 493 PRINTS P450 superfamily signature 285 302 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 PRINTS P450 superfamily signature 343 354 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 PRINTS P450 superfamily signature 422 431 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 PRINTS P450 superfamily signature 431 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 424 433 IPR017972 GO:0005506|GO:0016705
Vifa4g02474 493 Pfam Cytochrome P450 35 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 Gene3D Cytochrome P450 25 482 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02474 493 FunFam Cytochrome P450 90B1 24 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02474 Vifa-Chr4 744371062 744374561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02474 28 405 Cytochrome P450 AT3G50660 71.679 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02474 K09587 - gmx:100789515 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02474 4 744371062 744374561 Vifa4g02474 4 744371062 744374561 ECH
Vifa1g06867 1 1058004217 1058008253 Vifa4g02474 4 744371062 744374561 PCT