Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02465 ATGTCATTGAAAAGTATAGTTAGCGAACTGAAAGAGATTAAAAATAGAATATCAAAGCTCTGTGGTGGTGGTTCGAAATCAGACGTAGTTACAGATGTAACTCCAACTGAACCTATTCAACAGGGACAATGGGCGAGTCTACCGCCCGAATTGCTTTCGGACATAATACATAGGCTCGAAGAGAGTGAGACATCTTGGCCTGAGCGTACTGTTCTTATCTTTTGTGCTTCGGTGTGTAAATCATGGAGGTCCGTTACGAAAGAGATCATCAAGACTCCTCAGCAACGTGGGCTGATCACATTTCCTATTTCATTGAAGCTGCCCGGTCCCCGCATGTATGCTATGCGCTGCTTTATTAAAAGGAACAAAAAAACTTCTACATTCCTGTTGTACTTAAACTCTGTGCCAGCGGAGAATGAGAGTAGTAAGTTGTTATTAGCCGCGAAAAGGATAAAAAGAACCAAATTTCTGATATCCTTGGCAGCAGATGATTTTTCTCGAGCCAGGAACAAATATGTTGGTAAACTAAGGTCTAATATTTGGGGCACCAAGTTCACTATATATGACGGTCATCCTTCAATATTCGATGAAACTTCTCCTTCCCGAGAACTGAAGGGAAAACGTCCGATGAAAGACACATTCTCTGTAAGCCTGTCAGAGCCTTTGGAACGGAAACACAATGCTCCCGGATGGGATGAGCAGCGTCTGTTACGTTTCCTAGACGACAAGGACCGTGCTGTTGTGTCGTCTATAAAGAACTATGAACTTTTAGCTGTCCTTAATGGTTCTCGTAATGTTTCTCCTTTAGATCAAGAAAATGTGATCTTGCATTTTGGGAAGACTCCTACAAAAGATATGTACATCATGGATTACTATTATCCACTCTCTGCCTTTCAAGCATTTGCCATCTGCTTGACGGCAATGTGA 927 0.4207 MSLKSIVSELKEIKNRISKLCGGGSKSDVVTDVTPTEPIQQGQWASLPPELLSDIIHRLEESETSWPERTVLIFCASVCKSWRSVTKEIIKTPQQRGLITFPISLKLPGPRMYAMRCFIKRNKKTSTFLLYLNSVPAENESSKLLLAAKRIKRTKFLISLAADDFSRARNKYVGKLRSNIWGTKFTIYDGHPSIFDETSPSRELKGKRPMKDTFSVSLSEPLERKHNAPGWDEQRLLRFLDDKDRAVVSSIKNYELLAVLNGSRNVSPLDQENVILHFGKTPTKDMYIMDYYYPLSAFQAFAICLTAM 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02465 308 Pfam Tub family 218 307 IPR000007 -
Vifa4g02465 308 Pfam Tub family 105 199 IPR000007 -
Vifa4g02465 308 SUPERFAMILY Tubby C-terminal domain-like 94 307 IPR025659 -
Vifa4g02465 308 SUPERFAMILY F-box domain 37 87 IPR036047 GO:0005515
Vifa4g02465 308 Gene3D - 37 91 - -
Vifa4g02465 308 Pfam F-box domain 44 89 IPR001810 GO:0005515
Vifa4g02465 308 Gene3D Tubby Protein; Chain A 103 217 IPR025659 -
Vifa4g02465 308 PRINTS Tubby superfamily signature 172 196 IPR000007 -
Vifa4g02465 308 PRINTS Tubby superfamily signature 156 172 IPR000007 -
Vifa4g02465 308 PANTHER TUBBY-RELATED 212 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02465 Vifa-Chr4 742259769 742260952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02465 220 308 TUB Transcription Factor Family AT2G18280 47.191 3.14e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vifa4g02465 Tub 5.1e-23 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02465 K19600 - mtr:11406729 325.479