Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02455 ATGATGCATCATTGTTGCAGTAGCTCTCAGCAAGGTCACATAATGGGAGGAGGAGGAACGTGCACATGCGGTATGTTTCATCCACAGACCAACTCTAACTACTCCATGCTTTTCTCCAACTACCAAAACCATGATCATTACGACCATTACGATTCCTACTCCTACACTTCTCCATCTTCTTCTGTTGACTGTACACTCTCCCTTGCTACCCCTTCTACTCGTTTATCTGAAGACCAAGAGAAACGAAGCCGTCGCTCTTCTCTTACCAACTTCTGGAACAATAATAGTAACCATTCAAATCCAAACTCAAACTCAAACTCAAACTCAAACTCAAAACACAATTCTCATTCTCAAAACAAATCAAACCGAGGAAACAATATTGGTAATAACTCCACCAATGATTCTCTTCTCGCTCGTAGATGTGCTAGCTGTGACACCACTTCTACACCTCTTTGGAGAAATGGTCCTCGTGGCCCAAAGTCACTATGCAATGCTTGTGGGATTAGATACAAGAAGGAAGAACGAAGGGCGAATGCTGCCACGTCAGCAGCGGCAACCGGCGGTGTAATGGATACAAGCAGCATCTACAGCAACAGCAACAGCAACAACAACAGTTCATGGTACGGACAACCGCAGAGTCAAATGTATGGGAACGAGTTGCGGTTCATGGAGGATTCAGATGTAGAATCAGAGAATGGGATTCCTAATTTTCTCTCTTGGAGACTCAATACGAGTCTTGTTCATGATTACACCAGATGA 759 0.4401 MMHHCCSSSQQGHIMGGGGTCTCGMFHPQTNSNYSMLFSNYQNHDHYDHYDSYSYTSPSSSVDCTLSLATPSTRLSEDQEKRSRRSSLTNFWNNNSNHSNPNSNSNSNSNSKHNSHSQNKSNRGNNIGNNSTNDSLLARRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAATSAAATGGVMDTSSIYSNSNSNNNSSWYGQPQSQMYGNELRFMEDSDVESENGIPNFLSWRLNTSLVHDYTR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02455 252 PANTHER GATA TRANSCRIPTION FACTOR 18 19 252 IPR044272 GO:0003700|GO:0009908
Vifa4g02455 252 Gene3D - 137 205 IPR013088 GO:0006355|GO:0008270
Vifa4g02455 252 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 177 - -
Vifa4g02455 252 ProSitePatterns GATA-type zinc finger domain. 141 166 IPR000679 GO:0006355|GO:0043565
Vifa4g02455 252 Pfam GATA zinc finger 141 175 IPR000679 GO:0006355|GO:0043565
Vifa4g02455 252 CDD ZnF_GATA 140 172 IPR000679 GO:0006355|GO:0043565
Vifa4g02455 252 MobiDBLite consensus disorder prediction 72 132 - -
Vifa4g02455 252 SMART GATA_3 135 187 IPR000679 GO:0006355|GO:0043565
Vifa4g02455 252 ProSiteProfiles GATA-type zinc finger domain profile. 135 171 IPR000679 GO:0006355|GO:0043565
Vifa4g02455 252 MobiDBLite consensus disorder prediction 86 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02455 Vifa-Chr4 740083643 740084496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02455 22 252 C2C2-Gata Transcription Factor Family AT3G50870 43.860 9.41e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa4g02455 GATA 2.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02455 - - jre:108997534 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02455 4 740083643 740084496 Vifa4g02455 4 740083643 740084496 ECH
Vifa1g06828 1 1053057461 1053058486 Vifa4g02455 4 740083643 740084496 PCT