Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02444 ATGGGAACTGATAGTTCTGAAGTGGTAGAGGCATTACCAGATCCTCGTTCTTTTAAGGTACATAGTAGATTATGCATAGAACTCAGGAGATTAGTTGCTAGAGTCCTAAGGATATTTCCGCAGATAGAGGATACACGCCCTCGGTCCTCATCAGGAATAGCAGCTTTGTGTTTGCTCACTAGTACACTTGATAAAGCCAAACAGCTTCTGCAAAATTGTGCTGATTCTAGTATACTCTACCTGGCGATAACCGGGGAGTCAATACTGTTGAAATGCCAAAAGGCGAGAAAGTCATTAGAGAAAAGCTTAGTCCAGATTCACGATATAGTTCCTGTTATGTTGGCTGCAGAGATTTCTCGAATAATTGATGATCTTAGGTGTGTGACCTTTGCCCTGGATTCTGTTGATGAAGAGGCTGGAAAGGTTATGAGAAAATTGCTCCAGCAAGGTCCTTCAACCTCAGATAACGATTCAAAGGAAAATTCAGACATTAAATCTCTCCAGTTTGTGGCGGTGAGACTTAATATTACATCCGCAACAACCATCGTAGCAGAGAGTAGATCTATTAGGAAGTTATTACAAAAACTTGGACCAAAAGAGGAAAATAAAAAGATAATCTTGAAAAATCTTTTGTATCTTCTGAAAACGCATAGGAAGTCAATGATAGGAGAACAAATGGAGGTCTATTCTCGTCCTGAAGAACCAGTGACAACTGAGAATTCTGGTCATGATTCTTTATCCTCCAATCATGTGAGGTCAGAGCCGTATTTGAACCATGATCACTATGGAACTCCTGCAAGCGAGTTGAGTAGAGTTGCACCCCCGGAGGAGTACACATGTCCTATATCTTTAAGGTTGATTTATGACCCCGTTGTCATTGCTTCAGGAGTAACATACGAAAGGATGTGGATACAGAAATGGTTTGATGAGGGTAATGTTATATGCCCGAAAACGAAAAAGGAATTGTCGCATATGTCGTTAACTCCCAACGTTGCTTTAAAGGAGTTAATATCAAAATGGTGCAAAGATAATGGAGTCTCCATTCCTAACCCAAGCCGACAAGTAGAAGACATTCGCTCGTGGGAAGCTTCCGTTACTTCCATTAGGAGTTTTGGAAGTTCCATGAATGGTTTGAACTTGCCAATGGATATTAGTAACATGTCATTTGGATCGTTAGATAACAGTTACAATTCAGATTCCTCACTTTTGAAAGCTAGTCATGGCTTAAATTCAATGTTGGTCAAGACTAGAGGTCGGTCCCGCGGCCAGAAATCTGATTCACAGATACATGACACATATCTGACACCCTTGTCTAAACTTCATGAGCATCAATGGGATTTGCAATGCCAAGTCGTTGAAGATATGAAAATAGATTTCAAAAGCAATTACCAAGCGTTTTGCTCTACGTTGTCAACTGAGAATTTCATTGACCCCCTTGTGAGATTTCTGAGAACTGCATATGATAAGCATGACACAAAAGCTTTGAGAGGTGGAAGTCAGTTACTGTTGGAATTTACAAAGTACTGCAGAAATAGTGTGACAAACTTAAGTGAAGATACTTGCAGTGTGTTAGCAAGTCTCCTAGAGTCAGAAGTGATTGAAGAAGCTCTTGCCATACTGGAAGTGTTGTCGAACCATTGGTCAGATAAAGCTAACATTGTAGCTTCCAGTGCACTGGAAGCTGTTTCAAAGATCCTTGATTCTGACAAGTTCATCTCAAGAGACTGTACATGTTTACTGAAAAACCTTTTTGATACTGAAGATGGTAGGGTTTCTGTTGTTGAAACAAAGGGATGCATGTCATGTGTTGTTGAAATACTTGGATCCGGCACTGACGAGGAAAAGGAACCGGCACTGGCTATTGTGCTCTCTTTGTGCTCTCAACGCTTGGATTATTGTGAGTTGGTTATGCACGAGGGTATCATACCATATATTGTAAATATCTCCAATCTGGGAAACGATAGCACAAAGGCGAAGGCGTTGGAACTACTCCGACTTTTGAGGGATGTCGAGTACGAAGATTCCTTTGAGCCAAATCCCAACAACTCTCGAGATCGTAACGAACACTTTGAAGAAAAGAAGCCATCAAAGAAGACCGCGTTTTTCAAGAAACTGTCACAGTTGGGAAAATCAAGTCCAGTCGCATCGAAAAACAAGAGATGA 2163 0.4087 MGTDSSEVVEALPDPRSFKVHSRLCIELRRLVARVLRIFPQIEDTRPRSSSGIAALCLLTSTLDKAKQLLQNCADSSILYLAITGESILLKCQKARKSLEKSLVQIHDIVPVMLAAEISRIIDDLRCVTFALDSVDEEAGKVMRKLLQQGPSTSDNDSKENSDIKSLQFVAVRLNITSATTIVAESRSIRKLLQKLGPKEENKKIILKNLLYLLKTHRKSMIGEQMEVYSRPEEPVTTENSGHDSLSSNHVRSEPYLNHDHYGTPASELSRVAPPEEYTCPISLRLIYDPVVIASGVTYERMWIQKWFDEGNVICPKTKKELSHMSLTPNVALKELISKWCKDNGVSIPNPSRQVEDIRSWEASVTSIRSFGSSMNGLNLPMDISNMSFGSLDNSYNSDSSLLKASHGLNSMLVKTRGRSRGQKSDSQIHDTYLTPLSKLHEHQWDLQCQVVEDMKIDFKSNYQAFCSTLSTENFIDPLVRFLRTAYDKHDTKALRGGSQLLLEFTKYCRNSVTNLSEDTCSVLASLLESEVIEEALAILEVLSNHWSDKANIVASSALEAVSKILDSDKFISRDCTCLLKNLFDTEDGRVSVVETKGCMSCVVEILGSGTDEEKEPALAIVLSLCSQRLDYCELVMHEGIIPYIVNISNLGNDSTKAKALELLRLLRDVEYEDSFEPNPNNSRDRNEHFEEKKPSKKTAFFKKLSQLGKSSPVASKNKR 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02444 720 SUPERFAMILY RING/U-box 265 350 - -
Vifa4g02444 720 MobiDBLite consensus disorder prediction 234 253 - -
Vifa4g02444 720 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Vifa4g02444 720 Gene3D - 459 676 IPR011989 -
Vifa4g02444 720 MobiDBLite consensus disorder prediction 674 698 - -
Vifa4g02444 720 MobiDBLite consensus disorder prediction 229 260 - -
Vifa4g02444 720 Pfam U-box domain 275 344 IPR003613 GO:0004842|GO:0016567
Vifa4g02444 720 CDD RING-Ubox_PUB 275 327 IPR045210 -
Vifa4g02444 720 PANTHER U BOX DOMAIN-CONTAINING 575 671 - -
Vifa4g02444 720 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Vifa4g02444 720 FunFam RING-type E3 ubiquitin transferase 273 345 - -
Vifa4g02444 720 SUPERFAMILY ARM repeat 439 667 IPR016024 -
Vifa4g02444 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02444 Vifa-Chr4 736288035 736290885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02444 15 671 U-box Gene Family AT4G36550 36.879 1.30e-122 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02444 - - gmx:100798951 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02444 4 736288035 736290885 Vifa4g02444 4 736288035 736290885 ECH
Vifa4g02444 4 736288035 736290885 Vifa1g06795 1 1047949653 1047952686 ECH
Vifa1g06795 1 1047949653 1047952686 Vifa4g02444 4 736288035 736290885 PCT