Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02443 ATGGGAACTGATAGTTCTGAAGTGGTAGAGGCATTACCAGATCCTCGTTCTTTTAAGGTACATAGTAGATTATGCATAGAACTCAGGAGATTAGTTGCTAGAGTCCTAAGGATATTTCCGCAGATAGAGGATACACGCCCTCGGTCCTCATCAGGAATAGCAGCTTTGTGTTTGCTCACTAGTACACTTGATAAAGCCAAACAGCTTCTGCAAAATTGTGCTGATTCTAGTATACTCTACCTGGCGATAACCGGGGAGTCAATACTGTTGAAATGCCAAAAGGCGAGAAAGTCATTAGAGAAAAGCTTAGTCCAGATTCACGATATAGTTCCTGTTATGTTGGCTGCAGAGATTTCTCGAATAATTGATGATCTTAGGTGTGTGACCTTTGCCCTGGATTCTGTTGATGAAGAGGCTGGAAAGGTTATGAGAAAATTGCTCCAGCAAGGTCCTTCAACCTCAGATAACGATTCAAAGGAAAATTCAGACATTAAATCTCTCCAGTTTGTGGCGGTGAGACTTAATATTACATCCGCAACAACCATCGTAGCAGAGAGTAGATCTATTAGGAAGTTATTACAAAAACTTGGACCAAAAGAGGAAAATAAAAAGATAATCTTGAAAAATCTTTTGTATCTTCTGAAAACGCATAGGAAGTCAATGATAGGAGAACAAATGGAGGTCTATTCTCGTCCTGAAGAACCAGTGACAACTGAGAATTCTGGTCATGATTCTTTATCCTCCAATCATGTGAGGTCAGAGCCGTATTTGAACCATGATCACTATGGAACTCCTGCAAGCGAGTTGAGTAGAGTTGCACCCCCGGAGGAGTACACATGTCCTATATCTTTAAGGTTGATTTATGACCCCGTTGTCATTGCTTCAGGAGTAACATACGAAAGGATGTGGATACAGAAATGGTTTGATGAGGGTAATGTTATATGCCCGAAAACGAAAAAGGAATTGTCGCATATGTCGTTAACTCCCAACGTTGCTTTAAAGGAGTTAATATCAAAATGGTGCAAAGATAATGGAGTCTCCATTCCTAACCCAAGCCGACAAGTAGAAGACATTCGCTCGTGGGAAGCTTCCGTTACTTCCATTAGGAGTTTTGGAAGTTCCATGAATGGTTTGAACTTGCCAATGGATATTAGTAACATGTCATTTGGATCGTTAGATAACAGTTACAATTCAGATTCCTCACTTTTGAAAGCTAGTCATGGCTTAAATTCAATGTTGGTCAAGACTAGAGGTCGGTCCCGCGGCCAGAAATCTGATTCACAGATACATGACACATATCTGACACCCTTGTCTAAACTTCATGAGCATCAATGGGATTTGCAATGCCAAGTCGTTGAAGATATGAAAATAGATTTCAAAAGCAATTACCAAGCGTTTTGCTCTACGTTGTCAACTGAGAATTTCATTGACCCCCTTGTGAGATTTCTGAGAACTGCATATGATAAGCATGACACAAAAGCTTTGAGAGGTGGAAGTCAGTTACTGTTGGAATTTACAAAGTACTGCAGAAATAGTGTGACAAACTTAAGTGAAGATACTTGCAGTGTGTTAGCAAGTCTCCTAGAGTCAGAAGTGATTGAAGAAGCTCTTGCCATACTGGAAGTGTTGTCGAACCATTGGTCAGATAAAGCTAACATTGTAGCTTCCAGTGCACTGGAAGCTGTTTCAAAGATCCTTGATTCTGGTAACAAAGAGTACCATCGGAATGCTATTAGAATAATGTGCAATTTTTCTTCCAATACCTCACTTTGTTCTTACATGGTGTCTCTTGGGTGCATCTCAAAATTACTTCCATTTTTCGAAGACAAGTTCATCTCAAGAGACTGTACATGTTTACTGAAAAACCTTTTTGATACTGAAGATGGTAGGGTTTCTGTTGTTGAAACAAAGGGATGCATGTCATGTGTTGTTGAAATACTTGGATCCGGCACTGACGAGGAAAAGGAACCGGCACTGGCTATTGTGCTCTCTTTGTGCTCTCAACGCTTGGATTATTGTGAGTTGGTTATGCACGAGGGTATCATACCATATATTGTAAATATCTCCAATCTGGGAAACGATAGCACAAAGGCGAAGGCGTTGGAACTACTCCGACTTTTGAGGGATGTCGAGTACGAAGATTCCTTTGAGCCAAATCCCAACAACTCTCGAGATCGTAACGAACACTTTGAAGAAAAGAAGCCATCAAAGAAGACCGCGTTTTTCAAGAAACTGTCACAGTTGGGAAAATCAAGTCCAGTCGCATCGAAAAACAAGAGATGA 2283 0.406 MGTDSSEVVEALPDPRSFKVHSRLCIELRRLVARVLRIFPQIEDTRPRSSSGIAALCLLTSTLDKAKQLLQNCADSSILYLAITGESILLKCQKARKSLEKSLVQIHDIVPVMLAAEISRIIDDLRCVTFALDSVDEEAGKVMRKLLQQGPSTSDNDSKENSDIKSLQFVAVRLNITSATTIVAESRSIRKLLQKLGPKEENKKIILKNLLYLLKTHRKSMIGEQMEVYSRPEEPVTTENSGHDSLSSNHVRSEPYLNHDHYGTPASELSRVAPPEEYTCPISLRLIYDPVVIASGVTYERMWIQKWFDEGNVICPKTKKELSHMSLTPNVALKELISKWCKDNGVSIPNPSRQVEDIRSWEASVTSIRSFGSSMNGLNLPMDISNMSFGSLDNSYNSDSSLLKASHGLNSMLVKTRGRSRGQKSDSQIHDTYLTPLSKLHEHQWDLQCQVVEDMKIDFKSNYQAFCSTLSTENFIDPLVRFLRTAYDKHDTKALRGGSQLLLEFTKYCRNSVTNLSEDTCSVLASLLESEVIEEALAILEVLSNHWSDKANIVASSALEAVSKILDSGNKEYHRNAIRIMCNFSSNTSLCSYMVSLGCISKLLPFFEDKFISRDCTCLLKNLFDTEDGRVSVVETKGCMSCVVEILGSGTDEEKEPALAIVLSLCSQRLDYCELVMHEGIIPYIVNISNLGNDSTKAKALELLRLLRDVEYEDSFEPNPNNSRDRNEHFEEKKPSKKTAFFKKLSQLGKSSPVASKNKR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02443 760 SUPERFAMILY RING/U-box 265 350 - -
Vifa4g02443 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
Vifa4g02443 760 MobiDBLite consensus disorder prediction 234 253 - -
Vifa4g02443 760 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Vifa4g02443 760 MobiDBLite consensus disorder prediction 229 260 - -
Vifa4g02443 760 CDD RING-Ubox_PUB 275 327 IPR045210 -
Vifa4g02443 760 Pfam U-box domain 275 344 IPR003613 GO:0004842|GO:0016567
Vifa4g02443 760 SUPERFAMILY ARM repeat 439 707 IPR016024 -
Vifa4g02443 760 MobiDBLite consensus disorder prediction 714 739 - -
Vifa4g02443 760 Gene3D - 457 716 IPR011989 -
Vifa4g02443 760 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Vifa4g02443 760 FunFam RING-type E3 ubiquitin transferase 273 345 - -
Vifa4g02443 760 PANTHER U BOX DOMAIN-CONTAINING 22 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02443 Vifa-Chr4 736288035 736290885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02443 15 711 U-box Gene Family AT4G36550 38.582 1.36e-136 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02443 - - gmx:100798951 967.992