Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02441 ATGTACTTGAAAAGTATAGTCCGGGAACTCAAGGGGATGAAAAATGGGATAGGTAGTATATCGAGGCGTGGTGGTGAGAGCAAGCATTGGCTCTCTCGGTCGAAGTCGCATGTTGCTCCAGATGTAACTCCAATTGAGCCTATTCAGCAGGGACAGTGGGCGAGTCTGCCGCCTGAGTTGCTGTTGGATATAATCCGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCGCGCGCTGTTGTTGTGTTTTGTGCTTCGGTATGTAAATCGTGGAGGTCTGTTATGAAAGAGATCATCAAGACTCCTCAGCAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCCGGTCCCCGTGATTATCCAATACAGTGCTTTATTAGGAGGAACAGAGAAACTTCTACATTCGTGTTGTACTTAGGTTTGGTGCCATCGGAGCATGAGAGTAATAAGTTGTTACTAGCCGCCAGAAAGATAAGAAGAGCCATAGGTACCGGCTTTATCATATCCTTGGCTGCAGACGATTTTTCTCGAACCAGCAACAAATATGTTGGTAAACTGAGGTCTAATTTTTGGGGCACCAAGTTCACTGTATACGACAGTCAACCTCCACATGATGCTGCAGTTCAACCAAAGCATCGTCCAAGCGGGAGATTTAATTCTAAGCAGGTGTCACCTAGAGTTCCTGCATGTAATAATCTTGTTAGCACCGTTTCCTATGAGCTGAATGCTCTCTGGACTAGAGGGCCAAGAAGAGTGCACTGCACCATGAACTCTATACCTATCTCAGCTATTGAGGAAGGTGGAAATGCCCCAACTCCAACAGCGTTACCTCATATATTAGGCAAACCTTTTTCTCCCTCACCATCACTGGAAGAAAAAAGCCCAATGTCAGATTTGTACTCTGGCAGCCTATCCGAACTACCAGAACTGACTGAAGGCTCCATCGAGCCCTTGGTACTAAAAAACAAGTCTCCCAGATGGCATGAGCAGCTCCAGTGTTGGTGCCTAAACTTCATGGGACGTGTTACAGTGGCATCTGTAAAGAACTTTCAACTCGTAGCTGCTGTTGATCCATCTCATAATGTTTCGCCTGTGGAGCAAGAAAGGGTAATCTTGCAGTTCGGAAAGATTGGAAAAGATATATTCACCATGGACTACTCTTATCCTCTCTCTGCCTTTCAAGCCTTTGCCATCTGCTTGACAAGCTTTGACACCAAACCAGCCTGCGAGTGA 1239 0.4609 MYLKSIVRELKGMKNGIGSISRRGGESKHWLSRSKSHVAPDVTPIEPIQQGQWASLPPELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSVMKEIIKTPQQCGRITFPISLKQPGPRDYPIQCFIRRNRETSTFVLYLGLVPSEHESNKLLLAARKIRRAIGTGFIISLAADDFSRTSNKYVGKLRSNFWGTKFTVYDSQPPHDAAVQPKHRPSGRFNSKQVSPRVPACNNLVSTVSYELNALWTRGPRRVHCTMNSIPISAIEEGGNAPTPTALPHILGKPFSPSPSLEEKSPMSDLYSGSLSELPELTEGSIEPLVLKNKSPRWHEQLQCWCLNFMGRVTVASVKNFQLVAAVDPSHNVSPVEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02441 412 PANTHER TUBBY-RELATED 48 410 - -
Vifa4g02441 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
Vifa4g02441 412 Gene3D Tubby Protein; Chain A 111 412 IPR025659 -
Vifa4g02441 412 Pfam F-box domain 53 98 IPR001810 GO:0005515
Vifa4g02441 412 Pfam Tub family 114 407 IPR000007 -
Vifa4g02441 412 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Vifa4g02441 412 CDD F-box_AtTLP-like 53 97 - -
Vifa4g02441 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Vifa4g02441 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Vifa4g02441 412 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Vifa4g02441 412 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Vifa4g02441 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Vifa4g02441 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Vifa4g02441 412 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Vifa4g02441 412 SUPERFAMILY Tubby C-terminal domain-like 102 412 IPR025659 -
Vifa4g02441 412 Gene3D - 46 101 - -
Vifa4g02441 412 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02441 Vifa-Chr4 736041496 736043021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02441 1 412 TUB Transcription Factor Family AT2G18280 60.964 1.80e-173 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vifa4g02441 Tub 9.1e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02441 K19600 - gmx:100805380 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02441 4 736041496 736043021 Vifa4g02441 4 736041496 736043021 ECH
Vifa4g02441 4 736041496 736043021 Vifa1g06794 1 1047945498 1047948296 ECH
Vifa1g06794 1 1047945498 1047948296 Vifa4g02441 4 736041496 736043021 PCT