Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02423 ATGATAGACTACGGTGGCTCCATATTCAGAATTTCAACCGCCGGTCACTGCAATTTGAGTGTTCATTCAAAACTTAATCTAGATTGTTGTTTGAAAGTTACTGATTACGGGCTATCCCTGGTTGCTTCTGGTTGTCCCTCATTGACGTCAATTAGTCTCTATCGGTGTATCAACATTTCTGATGACGGATTAGAGACTTTAGCCACTGCTTGTTTATCTTTGAAATGCATAAACCTCTCGTACTGCTCACAAATATCCGACAAAGGGTTGAAAGCTCTTACTCAGAGGTGTCGTCAGCTTCAGGCAGTTAACATATCACACTGTGAGAGTATAAGAGGTGTTGGCTTCAAAGGGTGTTCAAAATCTCTCACACATGTAGAGGCTTGGTCTTGTAAGCTCAACCCAGAAGGGGTGACGGGAATAATTAGTGGCGGTGGTATAGAGTATCTAGACGTATCTTGTTTAAGTTGGTATCCCTTAGGAGATACCTTGCTTGGAATAAGATTGTCCTCAAACCTCAAAGTCCTTAACTTTCGAATGTGCAGATCTGTTTCCGATACTTCTATTGTTGCAATAGCCATGGGATGTACACTACTTGAAGAATGGAACTTAGCATTATGTCATGAGGTGAGGATATCTGGATGGCAAGCAGTGGGGTTATATTGTCAGAATTTGAAGAGACTGCATGTTAATCGATGCCGTAATCTCAATGATAATGGCCTGCAGGCATTACGAGACGGTTGCAGAAGTCTCTCGGTTTTGTACTTGAATGGTTGTGTTCACGTGACTCCTTTTGCATTAGAGTTATTCAAGTCTCACAGAGCAAATGTTTGTATAAAGGATGAAGAGGTTACCTGTGGAGGTTGTCAGAGTGCTCACACAGCTGCTATTGCTGTTCTGTGTGCTGAGAGAGGAATTACGTCACATCTGCTTCTACGAGGAGAGCAGCCTGAAATCTTGACTGGCTATAACTTGATGTCTACAATATATGGAAATGTCACATATGTTCCGAGAACTATGTACGCCAACAGGGAAGAAATGCTAAAGAACTATGCTAGGTCAGTGGCCGGAAACAGTGGTGCTTTCCTATGGTTCAATGATATCATTCAAGCTTCTTCAACAGGCGAATTGTCTACTTCTCAAAATTTTACGAAAATGGACGCAAGTAGAAGTGAGAGAAACCATCTTCAAAAGATTTTAGTTGTCAACGAAGGGGCTGGTGATTCTGTTGCTCTACTAGGTATTATTCGGTTAGTGCAATACTTATCACAAAATCATTTACTTGGGAAACAAAGAGCCACAAAATTTGTCGTTGATGCTGGTACTGGCACAACAGCTATTGGTATAGGACTTGCAGCCATTTTCTTTGGACTTCCGTGGGAGGTACACGCGGTTATGCTGGCAGATAAAATTGATGGGTACCGAAAGCAGGAAAAGCACTTGATTGTTGAATTCAGTAAGCATTTCAATGTTGAGTTTCTTGACCACGACGTAAACAAAGAAGATGCTGGGATTGTGCATTGGGTGGAACGTGACCGTCCAAGAAAGTTACAGATTCAATTTTGCGCTGCTTACATTTTCATCGGGGTTGTTTGCATTCTTCTTTATTTTGGAGGTCAAAAGCAAAGAGTTGCAATTGGAAGAGCAATTTTGAAAGATCCAAAAATATTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCCGAGTGTGCATGTATTGATACTAACTTGTGCATTTGTATGTTCTTTTTAAACCTTGGTGATTTCCTTGTGCAGAAACTAGGGGAAGGTGTGAAAGGGGTGTATATCTCGATAGACGTGGATTGTCTTGATCCTGCATTTGCTCCGGGAGTGTCTCATATTGAACCGGGAGGTCTTTCTTTCCGCGATGTTCTTAACATCCTACACAATCTTCAAGGTGATGTTGTTGCTGGAGACGTCGTTGAACTCAACCCACAACGCGATACTGTTGATGGAATGACTGCTATGGTAGCTGCTAAGTTGGTCAGAGAAATGGCTGCAAAGATTGCAAAATGA 2037 0.4183 MIDYGGSIFRISTAGHCNLSVHSKLNLDCCLKVTDYGLSLVASGCPSLTSISLYRCINISDDGLETLATACLSLKCINLSYCSQISDKGLKALTQRCRQLQAVNISHCESIRGVGFKGCSKSLTHVEAWSCKLNPEGVTGIISGGGIEYLDVSCLSWYPLGDTLLGIRLSSNLKVLNFRMCRSVSDTSIVAIAMGCTLLEEWNLALCHEVRISGWQAVGLYCQNLKRLHVNRCRNLNDNGLQALRDGCRSLSVLYLNGCVHVTPFALELFKSHRANVCIKDEEVTCGGCQSAHTAAIAVLCAERGITSHLLLRGEQPEILTGYNLMSTIYGNVTYVPRTMYANREEMLKNYARSVAGNSGAFLWFNDIIQASSTGELSTSQNFTKMDASRSERNHLQKILVVNEGAGDSVALLGIIRLVQYLSQNHLLGKQRATKFVVDAGTGTTAIGIGLAAIFFGLPWEVHAVMLADKIDGYRKQEKHLIVEFSKHFNVEFLDHDVNKEDAGIVHWVERDRPRKLQIQFCAAYIFIGVVCILLYFGGQKQRVAIGRAILKDPKILLLDEATSALDAECACIDTNLCICMFFLNLGDFLVQKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQGDVVAGDVVELNPQRDTVDGMTAMVAAKLVREMAAKIAK 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02423 678 Gene3D - 375 517 IPR036052 -
Vifa4g02423 678 Gene3D Ribonuclease Inhibitor 147 285 IPR032675 -
Vifa4g02423 678 SMART LRR_CC_2 248 273 IPR006553 -
Vifa4g02423 678 SMART LRR_CC_2 45 70 IPR006553 -
Vifa4g02423 678 SMART LRR_CC_2 97 122 IPR006553 -
Vifa4g02423 678 SMART LRR_CC_2 222 247 IPR006553 -
Vifa4g02423 678 SMART LRR_CC_2 170 195 IPR006553 -
Vifa4g02423 678 SMART LRR_CC_2 23 44 IPR006553 -
Vifa4g02423 678 SMART LRR_CC_2 71 96 IPR006553 -
Vifa4g02423 678 Gene3D - 286 365 IPR036052 -
Vifa4g02423 678 ProSiteProfiles Arginase family profile. 588 678 IPR006035 GO:0046872
Vifa4g02423 678 Pfam Leucine Rich repeat 221 244 IPR001611 GO:0005515
Vifa4g02423 678 Pfam Leucine Rich repeat 71 93 IPR001611 GO:0005515
Vifa4g02423 678 Gene3D Ribonuclease Inhibitor 11 143 IPR032675 -
Vifa4g02423 678 Pfam ABC transporter 538 564 IPR003439 GO:0005524
Vifa4g02423 678 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED 284 515 IPR027278 -
Vifa4g02423 678 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 280 487 IPR036052 -
Vifa4g02423 678 SUPERFAMILY RNI-like 19 276 - -
Vifa4g02423 678 ProSitePatterns Arginase family signature. 604 625 IPR020855 GO:0016813|GO:0046872
Vifa4g02423 678 Pfam Arginase family 592 672 IPR006035 GO:0046872
Vifa4g02423 678 Gene3D Ureohydrolase domain 584 678 - -
Vifa4g02423 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 570 IPR027417 -
Vifa4g02423 678 SUPERFAMILY Arginase/deacetylase 588 674 IPR023696 -
Vifa4g02423 678 Gene3D - 538 570 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02423 Vifa-Chr4 730290948 730295095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02423 538 570 Calmodulin-binding Proteins AT2G36910 78.788 6.52e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02423 K10268 - gmx:102667402 425.631