Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02408 ATGTCGTCATTTTTTTCTTCCATCACCTCTTCTTCTTCGGAAACCAACCTATTAACCGCAAGAACCATTATCTCAACTGCCGCCACCTATGCCGCCGCTGCAGCCGCCTCCGCAATGATAGTCCGTTCATTTACCAACGAGTTTTTACCAACGGACCTCCGTCACTACATATACACCAGAATCAAACACGCTTTCTACCGTCTCTCCCCTGACCTAACAATGGTAATCGAAGAATTCGAAGGCCTCGACACCAACCAAATCTACTCCGCCGCCGAAATCTACCTCGGCACCATAGCTTCACCGTCAACCAAAAAACTCCGCGTAAGCAAATCCGATCACCAACAATCCTATACTCTCACAATGGAACGTGACCAGTCCGTAACCGATTACTTCAAAGGCGTTAAACTCAACTGGACTCTGTACTGCCGCCACGTCGAGAATCTCCACCACAACCGCGACATAACCGCCACTTTGAAATCGGAAATCCGTTCTTTGGAACTAACATTCAACAGAAAGCACCAAAACCTGGTTCTCGATCAATACATTCCGTTCATTCTTGAAGAAGCAAGATCAAAGAAACAAGAACTGAAAGCGCTGAGAATATTCACCGTTGATCACCAGAATCTGTACGGGAATTTGAACGACGCGTGGGTGGGGACCACGCTGGATCATCCGTCGACTTTTGACACGCTGGCACTTGACCGTGATTTGCGGGAGTTTGTTACGGGGGATTTGGAAAAGTTTGTTAGGAGAAAGGAATATTACAGGAGAGTTGGAAAAGCTTGGAAGAGAGGCTACTTGCTGTATGGTCCACCTGGAACTGGGAAGAGTAGTTTGATTGCTGCTATGGCGAATTACTTGCATTTTGATATTTACGATTTGGAACTTACTGAATTGAATAGTAATGACGAACTTAGGAGGTTGTTGATCTCGATGCCGAATAGGTCTATCGTTGTTGTTGAGGATATTGATTGCACAGTTGAAATTCAGGATCGTAATTCACAATCGTTACCCCTCTCTGGCAGAAGTAGAGATAGACAGGTTACACTATCTGGGCTGCTGAATTTTATTGATGGGCTATGGTCAAGTTGTGGAGATGAGAGGATTATAGTGTTCACAACAAACCATAAGGAAAAGCTTGATTCGGCATTGTTGCGGCCGGGTCGAATGGATGTTCATATACACATGTCCTATTGTACTCCCTATGGTTTTAGGCAGTTGGCTTTCAATTACCTTGGGATTAAAGAAGATCCTCGGTTCTGTGAGATTGAAGAGAAAATTGAGAAAACGCTTGTGACTCCAGCTGAAATAGCAGAGCAGCTTCTTAAGGGCGTTGAGATTGGAACTGTTCTTGAAGATCTGTTGGTTTTTCTTACTAAGAAGAAAGAAAGTCAGGAAGTTGAGGCTAAAAAGAGAGAACAAGAGGAGCTGAAAGGTGACAGTGATGATAGTTAA 1455 0.4433 MSSFFSSITSSSSETNLLTARTIISTAATYAAAAAASAMIVRSFTNEFLPTDLRHYIYTRIKHAFYRLSPDLTMVIEEFEGLDTNQIYSAAEIYLGTIASPSTKKLRVSKSDHQQSYTLTMERDQSVTDYFKGVKLNWTLYCRHVENLHHNRDITATLKSEIRSLELTFNRKHQNLVLDQYIPFILEEARSKKQELKALRIFTVDHQNLYGNLNDAWVGTTLDHPSTFDTLALDRDLREFVTGDLEKFVRRKEYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLHFDIYDLELTELNSNDELRRLLISMPNRSIVVVEDIDCTVEIQDRNSQSLPLSGRSRDRQVTLSGLLNFIDGLWSSCGDERIIVFTTNHKEKLDSALLRPGRMDVHIHMSYCTPYGFRQLAFNYLGIKEDPRFCEIEEKIEKTLVTPAEIAEQLLKGVEIGTVLEDLLVFLTKKKESQEVEAKKREQEELKGDSDDS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02408 484 PANTHER BCS1 AAA-TYPE ATPASE 32 466 - -
Vifa4g02408 484 Pfam Domain associated at C-terminal with AAA 49 141 IPR025753 -
Vifa4g02408 484 SMART AAA_5 262 400 IPR003593 GO:0016887
Vifa4g02408 484 ProSitePatterns AAA-protein family signature. 368 386 IPR003960 GO:0005524|GO:0016887
Vifa4g02408 484 Coils Coil 455 480 - -
Vifa4g02408 484 Pfam ATPase family associated with various cellular activities (AAA) 267 397 IPR003959 GO:0005524|GO:0016887
Vifa4g02408 484 CDD RecA-like_BCS1 244 396 - -
Vifa4g02408 484 Gene3D - 217 394 IPR027417 -
Vifa4g02408 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 441 IPR027417 -
Vifa4g02408 484 Gene3D - 395 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02408 Vifa-Chr4 726233326 726234923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02408 264 396 Calmodulin-binding Proteins AT3G56690 28.169 4.56e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02408 - K08900 gmx:100788420 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02408 4 726233326 726234923 Vifa4g02408 4 726233326 726234923 ECH