Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02390 ATGTCAACGGAATCCCTCAAGCGCGAGCACTGGCAATGGGAGAACGCCATCGCCGGTGCCGCCGCCGGATTCGCCACCGTCGCCGTCATGCATCCCCTCGACGTTGTCCGAACTAGGTTTCAAGTTAACGATGGTCGAGTTTCTCATCTTCCCAGTTACAAGAACACCGCTCACGCAATTTTCACCATTACTCGCACCGAGGGATTAAGAGGGCTATATGCAGGCTTTCTTCCTGGGGTTCTTGGCTCAACTATATCTTGGGGTTTATATTTCTTTTTCTATGACAAAGCTAAACAAAGATATGCTAGGAGCAGAGAGGAGAAGTTGAGCCCGGGTCTTCATCTTGCCTCAGCTGCGGAAGCAGGAGCTTTGGTTTGTTTATGCACAAATCCTGTTTGGCTAGTGAAGACAAGATTGCAGCTTCAGACTCCTCTTCATCAGACACGGCCTTACTCTGGGTTATATGATGCATTTAGGACCATAATGAGGGAAGAAGGATTTAGTGCACTTTACAGAGGGATTGTTCCCGGTCTATTTCTGCAGGTCTCTCATGGCGCTATTCAGTTCACAGCCTACGAAGAGCTGCGCAAAACTATTGTTGATTTTAAGAGCAAGAGAAGTGAAATACAAAATCAAAACCCTGATCAACTCTTGAATTCTGTTGATTATGCTGTTCTTGGAGCAACATCAAAAGTTGCTGCAATACTCCTAACCTATCCATTTCAGGTTATCCGGTCTCGATTGCAGCAACGACCCGGTGGTAATGGGATACCAAGATATATGGACAGCTGGCATGTTGTGAAAGAAACTGCCCGATTTGAAAGTGTCCGAGGTTTTTACAAGGGAATCACGCCAAACCTCTTGAAAAACGTTCCTGCTTCTTCGATAACATTTATTGTTTATGAAAATGTTATAAAATTACTAAAACTAGCTAGAAAGAATGACTGA 948 0.4483 MSTESLKREHWQWENAIAGAAAGFATVAVMHPLDVVRTRFQVNDGRVSHLPSYKNTAHAIFTITRTEGLRGLYAGFLPGVLGSTISWGLYFFFYDKAKQRYARSREEKLSPGLHLASAAEAGALVCLCTNPVWLVKTRLQLQTPLHQTRPYSGLYDAFRTIMREEGFSALYRGIVPGLFLQVSHGAIQFTAYEELRKTIVDFKSKRSEIQNQNPDQLLNSVDYAVLGATSKVAAILLTYPFQVIRSRLQQRPGGNGIPRYMDSWHVVKETARFESVRGFYKGITPNLLKNVPASSITFIVYENVIKLLKLARKND 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02390 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 198 IPR018108 -
Vifa4g02390 315 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 311 IPR044712 GO:0006862|GO:0055085
Vifa4g02390 315 FunFam folate transporter 1, chloroplastic isoform X1 1 105 - -
Vifa4g02390 315 FunFam Folate transporter 1, chloroplastic 106 313 - -
Vifa4g02390 315 Coils Coil 192 212 - -
Vifa4g02390 315 Gene3D Mitochondrial carrier domain 106 315 IPR023395 -
Vifa4g02390 315 Gene3D Mitochondrial carrier domain 1 105 IPR023395 -
Vifa4g02390 315 Pfam Mitochondrial carrier protein 109 200 IPR018108 -
Vifa4g02390 315 Pfam Mitochondrial carrier protein 11 103 IPR018108 -
Vifa4g02390 315 Pfam Mitochondrial carrier protein 221 309 IPR018108 -
Vifa4g02390 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Vifa4g02390 315 SUPERFAMILY Mitochondrial carrier 12 303 IPR023395 -
Vifa4g02390 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 218 307 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02390 Vifa-Chr4 723284556 723289679 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02390 32 308 Chloroplast and Mitochondria Gene Families AT2G47490 37.324 3.42e-47 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02390 K15115 - gmx:100809599 551.592