Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02384 ATGGCTGGTTTGTTCTCTCTAGGAGGTGGAAGAGGAGGAAACCAACAAGGAGATGGGGAGTCACAACAAGGTCAGAATCAGATTCCTCCTCAAGAGACTCTTTTCTGGTACAACAAAAACGATGATGTTTCATCTTATAGAGGAAATTTTAGAACTATGGAACCAACAACAGCAACAGCAGCAAGCATCAGCACCAACACCAGCATCAGCAGCATCAACATGACCAGCAAGGTGGAAGATGTCATATCAACGCATGTTGCAAGACCATTTTTCTCGCGAGATCTGTATGGATTAGGAGTCGGAGTCGGACCGATGTCAAACTCATGTGAAAGCACTTGGGTTCCAGCTTCACGACGCCGTGAAAGACAACAACAGTTATCATCTTCTTCGTCCTTACAAAGAGACATTTCCAAACGCCCAAGAGACTCCAACGCTCTTGTTTCCACTCGCAATTTTCCATCAGGGTTAGAGGAAGCAAATTTTCCTGCTGTTGTAAGCTCACCAGCTGAGTTCAGGTGTGTAAGGGTTAGCTCAATAGACGATGCGGATGAAAGATTTGCATATCAAACGGCTGTCAACATTGGAGGACATTTGTTCAAAGGGATTCTCTATGATTTTGGTCCTGAAAACACTATCAACAACAATAACAATACTTATAATAATAGTAATTACATGATTGGCGAAACTTCCGGCGGTGGCGTTCCCGTTGCTCAACCGTTGAACTTAATCGCCGACTCTGATACCACTGTTGTTTCTTCCGGAGCACTTGTTGATCCGTCTTCCTTGTATCCGGCGCCAATGAACGCCTTCATGTCGTCTAGTGGTACGCAATTCTTCTCTCGTCCAAGGTCTTGA 855 0.448 MAGLFSLGGGRGGNQQGDGESQQGQNQIPPQETLFWYNKNDDVSSYRGNFRTMEPTTATAASISTNTSISSINMTSKVEDVISTHVARPFFSRDLYGLGVGVGPMSNSCESTWVPASRRRERQQQLSSSSSLQRDISKRPRDSNALVSTRNFPSGLEEANFPAVVSSPAEFRCVRVSSIDDADERFAYQTAVNIGGHLFKGILYDFGPENTINNNNNTYNNSNYMIGETSGGGVPVAQPLNLIADSDTTVVSSGALVDPSSLYPAPMNAFMSSSGTQFFSRPRS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02384 284 MobiDBLite consensus disorder prediction 115 134 - -
Vifa4g02384 284 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 111 268 IPR007818 GO:0003700|GO:0006355
Vifa4g02384 284 NCBIfam LRP1 C-terminal domain 161 208 IPR006511 -
Vifa4g02384 284 Pfam Domain of unknown function (DUF702) 110 209 - -
Vifa4g02384 284 MobiDBLite consensus disorder prediction 115 149 - -
Vifa4g02384 284 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02384 Vifa-Chr4 721175398 721177054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02384 105 284 C2H2 Transcription Factor Family AT3G51060 44.976 1.83e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vifa4g02384 DUF702 3.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02384 - - lja:Lj0g3v0059359.1 213.386