Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02380 ATGGGATGGATCATAGGATTATGTTCTTTTATGAGTATTTTCTTAGTATCTTGGTGGTTTTTATGTGTAAAGAAGAAAGAGAATAAAGTGATGATGAAGAATATGAAGAAGAAAGGAAAAGTTCCAAAAGGAAACAAAGGTTGGCCTTTACTTGGAGAGACTCTTGATTTCATTGCTTGTGGATACACCTCTAATCCTCTTAGCTTCATGGAAAAACGCAAGTCATTGTATGGTAATGTGTTTAAGACAAGCATATTAGGAAGTGGTGTGATTGTGTCAACAGATCCAGAGATAAACAAAGTGATTCTACAAAATCAAGGCAACATTTTCATCCCTGCTTATCCAAAATCAATTAGAGAATTAATGGGAGAAAACTCTATACTTCAAATGAATGGGAACATGCATAGGAAACTTCACTCACTCCTTGGAGGTTTCCTTCGTTCTCCACAATTCAAAGCTCGAATCACAAAAGATATTCAGCAATCTGTTGAACAATGTTTAGCTACTTGGACTCATCACCAACCAGTATACGTTCAAGATCAAGTTAAAAAGATTACATTTACTATTTTGGTGAAAGTTCTAATGAGCATTGACCCGGGTGAAGATTTATCTACATTGAAGAGAGAATTTGAAGAGTTCATCAAAGGATTAATTTGCTTGCCCATTAAGTTTCCAGGAACAAGACTATATAAATCCTTAAAGGCTAAGGAGAAAATGATGAAGATAGTGCAAAGGATAATAGAAGAAAGGAATGATAATAATAATAATAATAATAATAATAAGGATTGTGTGGCAAATGATGTAGTGGATATACTATTAGATTTAGAGGATAATAAAAGTGAGTTGAAAAAAAAGAGTGAGAATATAATTGAGATGATGATTCCTGGTGAAGAGACTCTTCCTACAGCTATGACCATGGCTGTTAAGTATCTTAGTGACTCTCCTCTTGCTCTATCCAAATTAGTGGAAGAGAACATGGAATTGAAGAGGAACAAGAATTGTTCCGACGATTACGCATGGACTGATTACTTGTCAATGCAATTTACTCAAAATGTAATCAACGAAACTCTTAGAATGTCAAATATTGTCAATGCCATTTGGAGAAAATCTATCAAAGATGTAGATATTAAAGGATACTTAATTCCTAAGGATTGGTGTGTTGTGGCATCTCTTACATCTGTTCATTTAGATGGCATCAACTATGAAAAGCCATTTGAATTTGATCCATGGAGATGGGAGAAAATTGAAGGTGGGACTAGAAACAACTGTTTTACACCATTTGGTGGTGGACAAAGATTATGTCCAGGGATAGAACTCTCTAGGCTAGAGCTCTCTATTTTCCTTCATCATCTAGTTACAACTTACAGATGGGTTGCTGAGAAGGATGAAATTATTTACTTTCCAACTGTAAAGATGAAAAGGAAACTCCCAATTAGTGTGACACCATTAACACTTGATTGA 1461 0.3477 MGWIIGLCSFMSIFLVSWWFLCVKKKENKVMMKNMKKKGKVPKGNKGWPLLGETLDFIACGYTSNPLSFMEKRKSLYGNVFKTSILGSGVIVSTDPEINKVILQNQGNIFIPAYPKSIRELMGENSILQMNGNMHRKLHSLLGGFLRSPQFKARITKDIQQSVEQCLATWTHHQPVYVQDQVKKITFTILVKVLMSIDPGEDLSTLKREFEEFIKGLICLPIKFPGTRLYKSLKAKEKMMKIVQRIIEERNDNNNNNNNNKDCVANDVVDILLDLEDNKSELKKKSENIIEMMIPGEETLPTAMTMAVKYLSDSPLALSKLVEENMELKRNKNCSDDYAWTDYLSMQFTQNVINETLRMSNIVNAIWRKSIKDVDIKGYLIPKDWCVVASLTSVHLDGINYEKPFEFDPWRWEKIEGGTRNNCFTPFGGGQRLCPGIELSRLELSIFLHHLVTTYRWVAEKDEIIYFPTVKMKRKLPISVTPLTLD 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02380 486 Coils Coil 272 292 - -
Vifa4g02380 486 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 427 436 IPR017972 GO:0005506|GO:0016705
Vifa4g02380 486 PRINTS E-class P450 group IV signature 68 91 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02380 486 PRINTS E-class P450 group IV signature 346 362 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02380 486 PRINTS E-class P450 group IV signature 434 452 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02380 486 PRINTS E-class P450 group IV signature 418 434 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02380 486 PRINTS E-class P450 group IV signature 395 413 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02380 486 CDD CYP90-like 73 482 - -
Vifa4g02380 486 SUPERFAMILY Cytochrome P450 37 482 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02380 486 FunFam 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 31 483 - -
Vifa4g02380 486 PRINTS P450 superfamily signature 295 312 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02380 486 PRINTS P450 superfamily signature 434 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02380 486 PRINTS P450 superfamily signature 425 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02380 486 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02380 486 PANTHER CYTOCHROME P450 26 38 458 - -
Vifa4g02380 486 Gene3D Cytochrome P450 30 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g02380 486 Pfam Cytochrome P450 42 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02380 Vifa-Chr4 716600636 716604586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02380 24 456 Cytochrome P450 AT3G13730 50.229 5.69e-164 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02380 K12637 - gmx:100812489 758.444