Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02367 ATGGATTCATCACAAAACAAAATGCAGGAAATGGAAAATCTTGCTGAGGAGAACCCAAACTCGTTTTCCGTAGATGATTGTAGTCTTGCTTCATTGTTTTTCAATGACGAACTATATCCTAAATCAATTGATGAACTTTTAGCCGTTTCTACTACTGTTAACAACTTTGCTTCCGAGTTGAATGGATCAGAATCGAATAATGAAACTCGTTCTATAGGTACTACTGAGTTAGGTGACTCATCCAAAGATGCAATCGCACTTATTTCTGAGAAATCCCCTGTGGCAGTAGATTGCGATAGTTCCAAAAACACAACTCATAACTCAGCTAAACAAACTTCGATATACAGAGGGGTTTCAAGGCACAAATGGACGGGCAAATTTGAAGCGAATCTATGGGATAACAGTAGTAAGCTAGAGGGTCGTGTCAAGAAAGGACGTCAAGGTGCGTATGATAGTGAAAAAAATGCAGCGAGGACTTATGATTTGGCAGCATTAAAGTACTGGGGACCAACAGCTACCATAAACTTTCGAGTTTCCGATTATGCAAAGGAATTAGAGGAGATGAAACATGTAGGAAAGCAAGAATATATTACTTCATTGCGAAGGGAAAGCAATGGTTTTTCAAGGGGAACTTCAAAATATAGGGGTGTTACAAGGCACCGGCGCAGTGGTAAATGGCAAGCAAGAATTGGCCGAGTTGCTGAAAACAAAGATCTATACTTGGGATTATTTGAAATCCAAGAGGAAGCTGCAGAGGCCTATGATATTGCAGCCCTAAAATATAAAGGTGCAAATGCTGTAACCAATTTTGATTCAAGTATATATGATATGGAATCTATATCGAAGAATCCTATTCCAGTTGGTCGAGCAGCAAAACGTTCGAAACCCTCCAAAGAATCCAAAAAGAAAGTTCCTACGAGTAGCGCTGGTCAACCTCATTGTACCAATGTTAATAGCGACGTCAATTTTCCGCCAATTGCTCCTATACCATATTTTCCATGCAGCCCCTTCCAGTATTTTCATCCTCCTACCAATGCAGAAAGAGGCACAGCAGAGTCTTCTAAAACTACAACCAATGCAGGTGCAATACTCAATACAATGCCAGCAGCAGCTGAGTCATTTCTTTGGCCTAATCAATTCTATTGA 1146 0.4014 MDSSQNKMQEMENLAEENPNSFSVDDCSLASLFFNDELYPKSIDELLAVSTTVNNFASELNGSESNNETRSIGTTELGDSSKDAIALISEKSPVAVDCDSSKNTTHNSAKQTSIYRGVSRHKWTGKFEANLWDNSSKLEGRVKKGRQGAYDSEKNAARTYDLAALKYWGPTATINFRVSDYAKELEEMKHVGKQEYITSLRRESNGFSRGTSKYRGVTRHRRSGKWQARIGRVAENKDLYLGLFEIQEEAAEAYDIAALKYKGANAVTNFDSSIYDMESISKNPIPVGRAAKRSKPSKESKKKVPTSSAGQPHCTNVNSDVNFPPIAPIPYFPCSPFQYFHPPTNAERGTAESSKTTTNAGAILNTMPAAAESFLWPNQFY 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02367 381 CDD AP2 212 273 IPR001471 GO:0003700|GO:0006355
Vifa4g02367 381 PRINTS Ethylene responsive element binding protein signature 253 273 IPR001471 GO:0003700|GO:0006355
Vifa4g02367 381 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Vifa4g02367 381 SUPERFAMILY DNA-binding domain 113 178 IPR016177 GO:0003677
Vifa4g02367 381 SMART rav1_2 213 277 IPR001471 GO:0003700|GO:0006355
Vifa4g02367 381 SMART rav1_2 114 183 IPR001471 GO:0003700|GO:0006355
Vifa4g02367 381 MobiDBLite consensus disorder prediction 1 20 - -
Vifa4g02367 381 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 76 308 - -
Vifa4g02367 381 SUPERFAMILY DNA-binding domain 212 273 IPR016177 GO:0003677
Vifa4g02367 381 CDD AP2 113 179 IPR001471 GO:0003700|GO:0006355
Vifa4g02367 381 MobiDBLite consensus disorder prediction 286 316 - -
Vifa4g02367 381 ProSiteProfiles AP2/ERF domain profile. 114 177 IPR001471 GO:0003700|GO:0006355
Vifa4g02367 381 Pfam AP2 domain 114 169 IPR001471 GO:0003700|GO:0006355
Vifa4g02367 381 Pfam AP2 domain 212 263 IPR001471 GO:0003700|GO:0006355
Vifa4g02367 381 Gene3D AP2/ERF domain 114 179 IPR036955 GO:0003700|GO:0006355
Vifa4g02367 381 Gene3D AP2/ERF domain 212 272 IPR036955 GO:0003700|GO:0006355
Vifa4g02367 381 ProSiteProfiles AP2/ERF domain profile. 213 271 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02367 Vifa-Chr4 711786997 711789248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02367 66 322 AP2-EREBP Transcription Factor Family AT5G57390 52.555 4.58e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vifa4g02367 AP2 1.9e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02367 K09285 - gmx:100777168 340.887