Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02358 ATGATGGATTCTTGTGTCCCACCTGGATTTCGGTTTCATCCGACCGACGGAGAGCTTGTTGGTTATTATCTTAGAAAGAAAGTAGCTTCTCACAAGATTGATCTTGATGTTATCAAAGAAATCGATCTATATCGTATCGAACCGTGGGATCTCCAAGAAAGGTGTAGAATTGGGAATGAGGAGCAGCATGAATGGTATTTTTTTAGTCACAAAGATAAGAAATATCCGACGGGGACGAGGACGAACCGAGCTACAATGGTAGGGTTCTGGAAAGCAACAGGAAGAGATAAGTCAGTGTATGAAAGAACAAAGCTTATTGGAATGAGGAAGACACTTGTTTTCTACAAAGGAAGAGCTCCTAATGGACAGAAAACTGATTGGATCATGCATGAGTATAGGCTTGAAACTGTAGAAAATGCACCTCCACAGGAGGAAGGTTGGGTTGTGTGTAAAGCATTCAAGAAGAAAACCAATCTTCAAACAAAGACTAATGAAAGATGGGAACCAAGCAACTTATATGGTATTGAACAAACAAGTAGCATCATCTCAATGCAACCTCAGAGAATTTCATCTCAAAGCTTCATGTACAAGCAAGATATAGGAGAAGATAACTCAATCTTCACGCATTCACAACAATTGTTACCTCTTCCTCAGTTGGAATGTCTCTCTTTGCCATTAGCAAAAAGACAAAACTCAATGTCAATAATATCAGAAAACAACATCAACAAAACTGAGAAAGTGACTGATTGGAGAGATCTTGACAAGTTTGTAGCTTCTCAGTTGAGTCAAGAAGATCATAGACATGAAACAAGCTCAGACATGTCATTGTTGCTGCTTCAAAGTAGTAGAGATGAAGAGATAAAGTTAAGCTCATTTTTAAGTACAAGCTTAGATTGTGACATTGGGATATGTGTATTTGAAAATTGA 927 0.3819 MMDSCVPPGFRFHPTDGELVGYYLRKKVASHKIDLDVIKEIDLYRIEPWDLQERCRIGNEEQHEWYFFSHKDKKYPTGTRTNRATMVGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENAPPQEEGWVVCKAFKKKTNLQTKTNERWEPSNLYGIEQTSSIISMQPQRISSQSFMYKQDIGEDNSIFTHSQQLLPLPQLECLSLPLAKRQNSMSIISENNINKTEKVTDWRDLDKFVASQLSQEDHRHETSSDMSLLLLQSSRDEEIKLSSFLSTSLDCDIGICVFEN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02358 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 234 - -
Vifa4g02358 308 FunFam NAC domain-containing protein 15 159 - -
Vifa4g02358 308 SUPERFAMILY NAC domain 4 155 IPR036093 GO:0003677|GO:0006355
Vifa4g02358 308 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Vifa4g02358 308 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Vifa4g02358 308 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02358 Vifa-Chr4 709764234 709766305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02358 2 308 NAC Transcription Factor Family AT2G18060 56.630 2.22e-131 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa4g02358 NAM 5.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02358 - - aprc:113869508 446.817