Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02356 ATGGTTTTCTTGGAAGGTTCTCGAAGACATATTGATCGCCTGCTTAGAGATCAACAAACTCTTTTTAGTTCGATAGATGATTTCTTGTGGTTCAAATTGTCGGCTGTGCGGGACTGCCCAAGTGGATCTTCATCCCTTGTTCTAAGTGACAGTGTGATTCCATACACTTTGGATGATTTGCAAAGTTACCTGAATAAATTTGAACCATCATACTATACAAAAAATGGAAAAAATCCTCTGGTATATCCTTATATCTTGCTTTTAAGCATTCAATTGCTTCCGGCTGTATTATACCTGTCTAAGGAAACAGGGGATGAAGGATATAATATTGATGCTGCCCACCTATCAATTGTGCTAGCTGATCACGGGGTCCTTTCTGAAGGGGCTGGTACTGGGAAAAAGTTGGGGGCGATGGATGCTTATGCAGAAGTAGCCACCATTGTCAGGCAATATGGATCTATGTATTTGCGCCTTGGTGGTCTCCAGATGGCACTAGAATCTTATGCACAAGCTGCTGCTGCGGTTGGTGGTGGGCAGTTGTCATGGACTGGTAGAGGTAATGTTGATCAGCAAAGGCAGAGAAACATGATGCTGAAGCAGCTTCTAACTGAATTGTTGTTAAGGGATGGAGGCATATATATATTGCTTGGCGCAAGAGGTGCTGGAGAAGAAGGAGAGTTAGGACGTTTTGTGGCGGATCCAAATGCAAGGAAACAGTTTTTGATTGAAGCAGCATGCCAGTGTCAGGAGGCTGGGATGTATGACAAATCTATAGAAATTCAGAAGAGAGTGGGTTCCTTCTCAATGGCGCTGGATACCATCAATAAGTGCCTCTCTGAAGCTATTTGTTCTCTTTTCCGGGGAAGGTTGGATGGTGAGAGCCAGACTGCTGGCTTGATCCATACTGGCAATGAGATTTGGAGACATATACTTACTACCCAGATGGAGGTTGCTAAACTTCCATTTTTGCCTCTAGATCCTCGAGGACCTGATACTTCTGTTGATGTGTTTGAAAATTTATCTCCTCATGTCCAAGCTTGTATACCAGACCTCTTGAAGGTTGCTCTGACTTGTCTGGACAATGTGGCAGACTCTGATGGATCGCTTCGCTTGTCAGCAGATCAAATATATGCAGTGGAGTTAATTGGAGGTGCTACTAGAGTGCCAAAGTTACAGGCTAAGCGTCAAGAGTTCCTTGGTAGAAAAGAACTTGATAGGCATCTTGATGCTGATGAAGCAATAGTTCTTGGTGCTGCTCTGCCTGCTGCAAATATAAGTGATGGTATCAAATTAAACCGAAAACTAGGTATGGTTGATGGTTCCTTATACAAGTTTGTGATTGAATTGAGTGGTGCCGATCTTCCGAAAAGTGAATGTTCTAGGCAGTTACTTGTACCTAAAATGAAGAAACTTCCGAGTAAGATGTTCAGATCCATTATTCACGACAAAGATTTTGAAGTTTCTCTAGCTTATGAAAGTAAACATCTTTTGCCACCTGGTGTTACCTCTCCCTTAAATGCTCAATACCAGATATCTGGTTTAGCAGATGCAAGTGGGAAATATTCGTCTCGGAATCTATTGTCCCCCATTAAGGCAATTAGTGTAAAGATTGTTGAGAAGATTACAGGAGCAGGGATGTCTCTATCGAAAGATTTTCTTGCTGAAGCTAAAACAAAATTACAAGCACTAGACAAAAAGGACGCAGAAAGGAAAAGGACAGCCGAGTCTAAAAATAATTTAGAAGGATATATATACACTACTAAGGAAAAGATTGAAACTCTTGAGGAGTTTGAAAAAGTCTCTACGAGTGAGGAACGCAAGTCCTTTATTGAGAAGCTTGATGAGGTGCAAGATTGGTTATATACAGATGGTGAAGATGCCAACGCCACAGAGTTTGAAGAGCGTCTAGATCAGTTGAAAGCCGTTGGAGATCCAAATTTTTTCAGGTTAAAAGAGCTTACAGCTCGACCAACAACAGTTGAGCATGCCCGCAAATACCTTATTGAGCTGAAACAGATTGTAGAAGAGTGGAAATCAAAGAAGTCACGGCTTCTAAAAGAACGAGTAGATGAGGTGATTAATATTGCAGAAAAGTTAAAGAACTGGCCGGATGAGAAAGAGACTGTCAAAAGAATTACTAGATTGAATCCGATGTTTCACATCATGCCTGATATGTCATCAATGGGCATGCCTTCATTTGATGGAAGCACTTCAGACAATTCAGCTGACACAGCTGTTCATGTGCAAGAAGATCCACATCATCGCTTTTACCAACATACATAA 2283 0.4157 MVFLEGSRRHIDRLLRDQQTLFSSIDDFLWFKLSAVRDCPSGSSSLVLSDSVIPYTLDDLQSYLNKFEPSYYTKNGKNPLVYPYILLLSIQLLPAVLYLSKETGDEGYNIDAAHLSIVLADHGVLSEGAGTGKKLGAMDAYAEVATIVRQYGSMYLRLGGLQMALESYAQAAAAVGGGQLSWTGRGNVDQQRQRNMMLKQLLTELLLRDGGIYILLGARGAGEEGELGRFVADPNARKQFLIEAACQCQEAGMYDKSIEIQKRVGSFSMALDTINKCLSEAICSLFRGRLDGESQTAGLIHTGNEIWRHILTTQMEVAKLPFLPLDPRGPDTSVDVFENLSPHVQACIPDLLKVALTCLDNVADSDGSLRLSADQIYAVELIGGATRVPKLQAKRQEFLGRKELDRHLDADEAIVLGAALPAANISDGIKLNRKLGMVDGSLYKFVIELSGADLPKSECSRQLLVPKMKKLPSKMFRSIIHDKDFEVSLAYESKHLLPPGVTSPLNAQYQISGLADASGKYSSRNLLSPIKAISVKIVEKITGAGMSLSKDFLAEAKTKLQALDKKDAERKRTAESKNNLEGYIYTTKEKIETLEEFEKVSTSEERKSFIEKLDEVQDWLYTDGEDANATEFEERLDQLKAVGDPNFFRLKELTARPTTVEHARKYLIELKQIVEEWKSKKSRLLKERVDEVINIAEKLKNWPDEKETVKRITRLNPMFHIMPDMSSMGMPSFDGSTSDNSADTAVHVQEDPHHRFYQHT 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02356 760 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN 315 363 IPR007231 GO:0005643|GO:0017056
Vifa4g02356 760 Pfam Nup93/Nic96 11 308 IPR007231 GO:0005643|GO:0017056
Vifa4g02356 760 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 575 657 IPR029048 -
Vifa4g02356 760 PRINTS 70kDa heat shock protein signature 408 428 - -
Vifa4g02356 760 PRINTS 70kDa heat shock protein signature 265 275 - -
Vifa4g02356 760 PRINTS 70kDa heat shock protein signature 376 392 - -
Vifa4g02356 760 Gene3D - 355 405 - -
Vifa4g02356 760 Pfam Hsp70 protein 370 645 IPR013126 GO:0005524|GO:0140662
Vifa4g02356 760 Gene3D - 548 661 IPR029048 -
Vifa4g02356 760 Gene3D - 406 423 - -
Vifa4g02356 760 ProSitePatterns Heat shock hsp70 proteins family signature 3. 379 393 IPR018181 -
Vifa4g02356 760 FunFam Heat shock 70 kDa protein 4 548 660 - -
Vifa4g02356 760 Pfam Basic leucine-zipper C terminal 707 757 IPR020983 -
Vifa4g02356 760 SUPERFAMILY Actin-like ATPase domain 298 424 IPR043129 -
Vifa4g02356 760 Coils Coil 667 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02356 Vifa-Chr4 709083963 709087078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02356 358 645 Calmodulin-binding Proteins AT1G16030 25.484 2.09e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02356 K14309 - gmx:100782831 607.06