Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02353 ATGAGAACTCGAAACGCGGATTCGTCTTCCAAACCCGTAACCCCTAAGAAGCCACCGCCGGCGAAAAAACCCGCCGGAGAATCTCTCGTCGCAAAGCGCACGCCTCCATCCAAAACCAGAAACGCCAAGAAGGCGGATGCATCACCCGCAACCGAACCTTTACCTGATTCCAATCCGGATCAATCTGAGCAGCAAAAATCGATAGCTAGTGCTACTACCGCTACGAAATCTGCGAAGAGGAAAACACCAGGTAAAACGAGGACAACGGTTGTTGTCAATACTCCAAATTTGGAAGAGCAATTGGAGGCTGAAGTTGGTGAAGCGGCAGAGAAAGTGGTAGAAGCTGGAAATGTTAGCGACATTGGTGCAGATGGGAGGGAACTAAAGGCCATGGAAATGGATGAACCTGTTGTTGTGAAAGTTTGTGAGTTGGGTGAAAAGGGGAAGAACGTGGAAGATAGTGAAGCCATTGTTTCTCAAGAGGCTCCTCTTTCTTTTAATCAGCTAGGATGCACTGTCATGGATCTTAATATATCTGTGGCTGATAATGAAGATTATACTGCTGCAAAGGAAGGAGGGGAAGCGTTGAAAGAAGAAGAATTGAATGTAGCAGAGGAAGAGAGAGATAAGGAAGAGTTGAAAGCACACGAAGGAAAAAAGGGAAAGGATGAGCTGAACGATCTAGGAGAGAAAGGAAAAGAAGAGTTGAACCAACAAAAAAGAGAGAAAGAAATTTTCGAGTTTAAAATACAGGAAGGTGAGAAAGGAAAGGAAGAGCTGAAAGAACAGGAAGTAGAGAAAGGAAAAGAAAAGTTGAAGGAGCATGAAGAAGAGAAGGGAAACGAAATGTTAAAAGAACCGGTACGAGAGAAGGAAAAAGAAGAGTTTAAAGAACATGAAGCACAAAAAGGAAATGAAGAGTTTAATGATGAGAAATTAGAAAAAGCAAAAGGAGAGGAAACAAACATTATTGGACATGAAGAGCACTCTAGTGTAGAAGTTCAAGCCCAACCGCAAAAAGAATTTGATCCTGAAAATTATGGTGTTGAAGGGCCAAAGAGTGGTGAGTTGATAGATCTTGAAGAACAAGGGAGGGTGGAGCTTGAGGAGGAAGATCTAGAGGAAGATCCAGAGGAAGATCCAGAAGAAGATCCAGAGGAACCGTCCGAAGAAACCGAGACATTGGATGAAGAGCATATCGATTTTGAAGCCATTGCAAAGCAACGAAAGATTAGGAAAGAGCATGAGATATTTGTTGGTGGGTTGGATCGTGATGCTACTGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGGTAGTGGAAGTTAGGATGCATAAAAATTCGGCAACAAATAAAAATAAGGGCTATGCTTTTGTGAAGTTTGCCATTAAGGAGCACGCAAAAAAAGCTTTGTCTGAAATGAAGAACCCTGTTATAAAGGGAAAACGGTGTGGCACCGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTCCAATAAATGGACAAAAGAAATTATTAAACAGAAGCTGAAGGACTATGGTGTCGAAGGGGTTGAAAACATTACACTCGTACCAGATGTTCAACATGAAGGCTTGAGCCGGGGCTTTGCATTCCTTGAGTTTTTTTGTCATGCTGATGCCATGCTTGCATACAAGAGACTTCAAAAGCCCGATGTCATATTTGGTCATGCTGAGCGAACTGCTAAGGTAGCCTTTGCCGAACCGGTACGTGAACCAGACCCAGAGATAATGGCACAAGTGAAGTCTGTGTTTATTAACGGCCTCCCTCTTCACTGGGAGGAAGATCATGTGAGGGAGCGGTTGAAATCTTACGGTGAAATTGTAAAAATTGTTTTGGCGAGAAATATATCTACAGCTAAGAGAAAGGATTATGGATTTGTGGATTTTTCTACACATGAAGCTGCTTTAGCTTGTGTTGACGGTGTAAATAAATCAGAATTGGGAGACGGGGCATCAAAGATAAAAGTGAGAGCTAGGCTTTCAAACCCTTTCCCTAAAATGCAGGCTGTCAAGGGTGACATGTGTGGTGGCCTCCGCATTGGCCAGGCTAGGAGTGAAGCTTACCCAAGATCAGAAATAGGTTTTGGGCGAGGGCGAGGAAGACATCCCTTCAATAACAGGGGAAATTTCAATAGGGGCAGGAGTTTTTATCATCACGGGGGGCGCAGTCAAATTGGAAGGGGTTTTTGGGACGACCCTGATTTTAGTATGCATCCGGATTTCCATCAGCGGCAATTCGGTCCACAAGGAGCTATGGGGGGTGGACATTATGCAGGTAGTCTAGGTGGTGCTCCATTTGCTGGTCCATCTAGACATTATTATGATAGAGAATGGTATGGTTTCCCTGATGGAGGCCCCGGTGAGCCGATTCTTCCAAGAAGGCCATACTCTCCAGGTGGACGGTTTTATGGCATCCCTGACGGAGGTCCTGGTGAGCCTATTCCTCCAAGAAGGCCATACTCTCCAGGTGGACGGTTTTATGGTATCCCTGATGGAGGCCCTGGTGAGCCTATTCCTCCAAGAAGGCCATACTCTCCAGGTGGACAGTTTTATGGTATACCTGATAGAGGCCCTGGTGAACCTATTCCTCCAAGAAGGCCTTATTCTCCAGGGGGACAGTTTGACGTGCCTTTTATGGGAAGGCATGTTGATGATCCATATCTATACGAGGACAATATGCGTGGAATAAAACGGCCATTTTATATGACCGACCCTGAACCTGATTACATGGGGCCTAATAGACTTCGCCCACGATTTGATTATGCAGATCCATCTATATTTCACGGAGCTCGATACCATGATTATGCCGGTGCTGGCAGCAGGCAGTACCCTAATGACTATTATGGTTCTCATCATGGAAGTGGTCCACACTCATCTTTTTATGGGGGCGATGGTCTACATGAAGACAGATACTATTATTAG 2958 0.4459 MRTRNADSSSKPVTPKKPPPAKKPAGESLVAKRTPPSKTRNAKKADASPATEPLPDSNPDQSEQQKSIASATTATKSAKRKTPGKTRTTVVVNTPNLEEQLEAEVGEAAEKVVEAGNVSDIGADGRELKAMEMDEPVVVKVCELGEKGKNVEDSEAIVSQEAPLSFNQLGCTVMDLNISVADNEDYTAAKEGGEALKEEELNVAEEERDKEELKAHEGKKGKDELNDLGEKGKEELNQQKREKEIFEFKIQEGEKGKEELKEQEVEKGKEKLKEHEEEKGNEMLKEPVREKEKEEFKEHEAQKGNEEFNDEKLEKAKGEETNIIGHEEHSSVEVQAQPQKEFDPENYGVEGPKSGELIDLEEQGRVELEEEDLEEDPEEDPEEDPEEPSEETETLDEEHIDFEAIAKQRKIRKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRMHKNSATNKNKGYAFVKFAIKEHAKKALSEMKNPVIKGKRCGTAPSEDNDTLFLGNISNKWTKEIIKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFFCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPVREPDPEIMAQVKSVFINGLPLHWEEDHVRERLKSYGEIVKIVLARNISTAKRKDYGFVDFSTHEAALACVDGVNKSELGDGASKIKVRARLSNPFPKMQAVKGDMCGGLRIGQARSEAYPRSEIGFGRGRGRHPFNNRGNFNRGRSFYHHGGRSQIGRGFWDDPDFSMHPDFHQRQFGPQGAMGGGHYAGSLGGAPFAGPSRHYYDREWYGFPDGGPGEPILPRRPYSPGGRFYGIPDGGPGEPIPPRRPYSPGGRFYGIPDGGPGEPIPPRRPYSPGGQFYGIPDRGPGEPIPPRRPYSPGGQFDVPFMGRHVDDPYLYEDNMRGIKRPFYMTDPEPDYMGPNRLRPRFDYADPSIFHGARYHDYAGAGSRQYPNDYYGSHHGSGPHSSFYGGDGLHEDRYYY 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02353 985 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 593 673 IPR000504 GO:0003723
Vifa4g02353 985 MobiDBLite consensus disorder prediction 363 396 - -
Vifa4g02353 985 SUPERFAMILY RNA-binding domain, RBD 416 661 IPR035979 GO:0003676
Vifa4g02353 985 FunFam Heterogeneous nuclear ribonucleoprotein Q 495 579 - -
Vifa4g02353 985 CDD RRM_SF 595 669 - -
Vifa4g02353 985 FunFam Heterogeneous nuclear ribonucleoprotein Q 580 733 - -
Vifa4g02353 985 SUPERFAMILY RNA-binding domain, RBD 490 582 IPR035979 GO:0003676
Vifa4g02353 985 CDD RRM_SF 497 560 - -
Vifa4g02353 985 Gene3D - 494 579 IPR012677 -
Vifa4g02353 985 Gene3D - 582 737 IPR012677 -
Vifa4g02353 985 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 415 493 IPR000504 GO:0003723
Vifa4g02353 985 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 595 661 IPR000504 GO:0003723
Vifa4g02353 985 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 497 565 IPR000504 GO:0003723
Vifa4g02353 985 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 417 485 IPR000504 GO:0003723
Vifa4g02353 985 Coils Coil 222 242 - -
Vifa4g02353 985 MobiDBLite consensus disorder prediction 844 876 - -
Vifa4g02353 985 SMART rrm1_1 594 669 IPR000504 GO:0003723
Vifa4g02353 985 SMART rrm1_1 496 573 IPR000504 GO:0003723
Vifa4g02353 985 SMART rrm1_1 416 489 IPR000504 GO:0003723
Vifa4g02353 985 Coils Coil 194 216 - -
Vifa4g02353 985 Coils Coil 258 285 - -
Vifa4g02353 985 MobiDBLite consensus disorder prediction 54 95 - -
Vifa4g02353 985 Gene3D - 356 490 IPR012677 -
Vifa4g02353 985 MobiDBLite consensus disorder prediction 1 95 - -
Vifa4g02353 985 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 258 966 - -
Vifa4g02353 985 MobiDBLite consensus disorder prediction 192 396 - -
Vifa4g02353 985 CDD RRM_SF 417 486 - -
Vifa4g02353 985 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 495 580 IPR000504 GO:0003723
Vifa4g02353 985 MobiDBLite consensus disorder prediction 192 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02353 Vifa-Chr4 709019762 709024032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02353 416 661 Eukaryotic Initiation Factors Gene Family AT2G23350 23.715 3.05e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02353 - - psat:127074656 1431.77