Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02350 ATGAAGCGAACGAGGAAATCTAACAGGGTTTCATGGGCTTCTGGTGGTAATCTATGTCAGGTAAAATTGTTCTTGTCTGACGATTTCCCGTCAAAAGTTGGCCTGGTATCGCACGATAATCTTGAAGCAAAATCATCGTCATTGTTGTGTTCTAGTGCTAGTGATTCTATTGATTTACCTCCTGGATTTGAAAGTAGTCATTTCCTGAACCAATCCAAGGTTGAATTCTCCCACATTCCAAAGATAAAATGGGAATGCCCTCTACCGTTTGTTTTCAGTTCTCGTTGGCTAGTTGCAGCTGGTGAACAAAGTAGGGAGAAAGATGTTCAGAAGCTGAGAGAAATAAGAGTCCTTGAAGCAGTTTATCCCAGACTCTCTGCCATTCCTCCTAGCCCTTCTGTTTCTCTGGATGTAGAAGAAGAAGATTATGATGGTAGCATTACTCCTCTGATCCCTATCATTCCCATTGAGGAGGAGGAAGAGTCCATGGCTAATTCGCCTGAACCGGAGGCAGCAGCGAACCCTCACCCCAATGTTCAGTCTCCGAATTTGCATCAATATATGTCAGCAACAACTTCCATTAATTCAGACCGTAACACCTCTGGCACTGTCTCCCCGGCTGCCGGTTTATTGCCTTTCGCCGGGGTATCTTCTGGTTTGGAAGCTGATGTAGTGGCAGCCTCTGATGCTGTGGCAGCCATCCTTAAGAATAATGAGCACGGAGGCTTAATTGATATGGATCTACTAGTTAAAATATTTAGTGACCCAAAAATGATCGAGAATTTGATCAACGAAGCCTCCAATTTAGGTGCATCCTCAAATGCAGTGTCTTTACCCACTTCTTCTGGTTTGAAATCTTCTATTCCATCATCTCCTTTTTTTACACCTACACCTGACATGTCAGCTTCTAGGAATACACACATTAGTTCTGTGGGTTTTTCTGGGTTCAATCCTGCAAGTCCATCAGTTTCATCTTTGAATTCTACATCTGGTAAGCCAGCAACTCTTTTTACTCCTTCAATTCCGTCATATTCTACGGTGACTTCTCCACATGACAGGCACGCAACTGCATCCGTTCCATTTTCTAGGCCGGCGGTGTCTGGTCAACCAGTATCCCCCTCTGTTTTTGTGCCTACACCTACATCTGCACCTCATATGCCCAGACCCGTCGACAATAATTTTCACATGTCAAATGGAATTCCAACTGCGTTAAGTTCCCAGCCTCAGCCAGATTCATTTCTGGCATCTGGGGCGAAGCGACCCGCGTCTTTTGCTTTTGCTTCCATGTCTTCTAGTGAACCAAGCACAGCTCCATTGCCTCCTACAGGGAACATGCATACTGTTTTCAACCATGGACAAACCACTGCTAGAACAAAGCCGTATCAAACTAGTACAGGTTCAGTATCTGCTGTAAAGGATGCCAACTATTATAAAAACCTCATTAGGCAACATGGTGCAGACGGACAAGATAAGCCGGACCCTCAAATAGGTAACCGTCATAGTAACTTCCCAGATATAAATTTGGGACATAATAATCAAGGGGAAGTGAAACACAAAAGCAAGAAACCATGTATTTATTTTAATAGCCAAAGGGGGTGCAGGAATGGTGCCAGTTGCTCCTTTCAGCACGATGTTTCACCTCAGTCGGGGGGAGCTGGTAACTTCCCAGGGCCGAAGAATCCTAAAAGTTTTAAAATGTGA 1701 0.4433 MKRTRKSNRVSWASGGNLCQVKLFLSDDFPSKVGLVSHDNLEAKSSSLLCSSASDSIDLPPGFESSHFLNQSKVEFSHIPKIKWECPLPFVFSSRWLVAAGEQSREKDVQKLREIRVLEAVYPRLSAIPPSPSVSLDVEEEDYDGSITPLIPIIPIEEEEESMANSPEPEAAANPHPNVQSPNLHQYMSATTSINSDRNTSGTVSPAAGLLPFAGVSSGLEADVVAASDAVAAILKNNEHGGLIDMDLLVKIFSDPKMIENLINEASNLGASSNAVSLPTSSGLKSSIPSSPFFTPTPDMSASRNTHISSVGFSGFNPASPSVSSLNSTSGKPATLFTPSIPSYSTVTSPHDRHATASVPFSRPAVSGQPVSPSVFVPTPTSAPHMPRPVDNNFHMSNGIPTALSSQPQPDSFLASGAKRPASFAFASMSSSEPSTAPLPPTGNMHTVFNHGQTTARTKPYQTSTGSVSAVKDANYYKNLIRQHGADGQDKPDPQIGNRHSNFPDINLGHNNQGEVKHKSKKPCIYFNSQRGCRNGASCSFQHDVSPQSGGAGNFPGPKNPKSFKM 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02350 566 MobiDBLite consensus disorder prediction 397 413 - -
Vifa4g02350 566 MobiDBLite consensus disorder prediction 537 566 - -
Vifa4g02350 566 MobiDBLite consensus disorder prediction 397 416 - -
Vifa4g02350 566 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 553 - -
Vifa4g02350 566 MobiDBLite consensus disorder prediction 427 467 - -
Vifa4g02350 566 MobiDBLite consensus disorder prediction 484 518 - -
Vifa4g02350 566 ProSiteProfiles Zinc finger C3H1-type profile. 519 546 IPR000571 GO:0046872
Vifa4g02350 566 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02350 Vifa-Chr4 708860721 708867302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02350 81 152 Homeobox Transcription Factor Family AT4G02560 43.056 4.58e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g02350 zf-CCCH 0.00028 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02350 - - cam:101501407 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02350 4 708860721 708867302 Vifa4g02350 4 708860721 708867302 ECH