Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02328 ATGGCCGATATAGTAAAACAGCTCTTAGCCAAACCGATCCAATTAGCCGACCAAGTCAGCAAAGCCGCCCAAGAAGGAAGCTCCTCTTTCAAACAAGAATTCCTAGAACTCAAATCCAAAACGGAAAAACTCGCTTCACTCCTCCGCCAAGCCGCGAGATCAAGCTCCGATTTATACGAACGACCAACGCGCCGCATCATCGGCGACACCGAACAAGTCCTCGAAAAAGCACTAACGTTAGTCCTCAAATGCAAAGTCAACGGTCTCATGAAGCGTGTCTTCAGCATAGTCCCCTCCGCCGCTTTCCGCAAAATGTCTTCCCATCTCGAAAACTCAATCGGCGACGTCTCCTGGCTCCTCCGCGTCTCCGCCCCGACGGAGGAAGGGAGCTACGAGTGTCTAGGTCTTCCGCCTATCGCTTCGAATGAACCGATTCTAGGTTTAATCTGGGAACAGATAGCGATTCTTCATAATGGTTCTGTTGATGATCGATCTGACGCGGCTGCTTCTTTGGTTTCGCTTGTTCGCGATAACGATCGGAACGGGAAGTTGATAATTGAGGAAGGTGGGGTTGGTCCTTTGTTGAAGCTTATTAAGGAAGGTAAAAGGGAAGGGCAGGAAAATGCTGCTAAAGCTATTGGGCTTTTGGGTAGGGATGCGGATAGTGTTGATGTTATGATTCATGCTGGTGTTTGTTCTGTTTTCGCCAAGATACTTAAAGAAGGGCCTATGAAAGTTCAAGCTGTTGTGGCTTGGGCTGTTTCGGAACTTGTTTCCAAGTATCCCAAATGTCAAGATGTTTTTGCTCAGCATAATATTGTTAGGTTGCTTGTTAGTCATATCGCGTTTGAGACTGTTCAGGAGCATAGTAAATACGCTATTGTTAGTAATAAGCCGAATTCGATCCATGCTCTTGTGTTAGCTAATGGTAATAGTAATAATGGTGGTAAGTCGGGTTCTAATGATGTGAAAAGAGAGACTGAAGATGAGGTGAAGATTCGGATGCAGCATCCTTTAGGTGATAGGTCTACGAATCAGATGCATAAAGTGGTGGCAAGTACTATGGCAATGCATGCTGCAAGCGCGAACGCCGACATCAACAAGAATCAACAAACCGGTGAAGGGAATGAAGGGAGTCTAAACTCTCATTCTCAGGTGGCGAGTCATTCAAATGGGAGTGGGAATGGTAATACGAAGCAAAACTATTCTTATTCTGGGATTAGCATGAAGGGGAGGGAGCTTGAGGATGCTGAGAGTAAGGCTGAGATGAAAGCAATGGCTGCGAAAGCTCTTATGGTTCTAGCAAAGGATAACTCGGGGATTTGTCGTAGTATAACAGAATCAAGGGCTTTGTTATGCTTTGCTATTCTCCTTGAAAAAGGACCTGAAGAAGTGAAGTACCATTCTGCCTTGGCATTGAAAGAGATTACTGCAGTGGCTGAGAAAGATCCTGAATTAAGAAGAATGGCATTTAAGCCGAATTCTCCTGCCTGTAAAGCAGTTGTTGATCAAGTGATCGATATTATCGACAAAGAAGATGAGAGGCTTCTGATTCCTTGTGTTAAGGCTATTGGAAGTTTGGCAAGGACCTTCAGGGCAACTGAGACAAGGATAATTGGTCCGTTGGTTCGACTTCTAGACGAAAGAGAGGCTGAAGTATCCAAAGAAGCTGCGGACTCACTCACGAAATTTGCCTGCAATGACAACTACCTCCACCTTGATCACTCTAAGGCAATCATAAGCTCCGGTGGTGCAAAACACTTGGTTCAGCTTGTGTATCTTGGGGAACCCCCGGTTCAATATTCAGCCTTGGTTCTGCTATCATATATCGCATTGCATGTGCCGGACAGTGAAGAACTTGCTCGGGTTGAGGTTCTTGGAGTTCTTGAATGGGCATCCAAGCAACTTAATGTGACTCAAGATGAAACTGTCGCGATGTTGTTGCAAGAGTCCAAGAATAGGCTTGAGCTTTACCAGTCTAGAGGTTCAAGAGGGTTCCAAAAATTACATCAATAG 2016 0.4539 MADIVKQLLAKPIQLADQVSKAAQEGSSSFKQEFLELKSKTEKLASLLRQAARSSSDLYERPTRRIIGDTEQVLEKALTLVLKCKVNGLMKRVFSIVPSAAFRKMSSHLENSIGDVSWLLRVSAPTEEGSYECLGLPPIASNEPILGLIWEQIAILHNGSVDDRSDAAASLVSLVRDNDRNGKLIIEEGGVGPLLKLIKEGKREGQENAAKAIGLLGRDADSVDVMIHAGVCSVFAKILKEGPMKVQAVVAWAVSELVSKYPKCQDVFAQHNIVRLLVSHIAFETVQEHSKYAIVSNKPNSIHALVLANGNSNNGGKSGSNDVKRETEDEVKIRMQHPLGDRSTNQMHKVVASTMAMHAASANADINKNQQTGEGNEGSLNSHSQVASHSNGSGNGNTKQNYSYSGISMKGRELEDAESKAEMKAMAAKALMVLAKDNSGICRSITESRALLCFAILLEKGPEEVKYHSALALKEITAVAEKDPELRRMAFKPNSPACKAVVDQVIDIIDKEDERLLIPCVKAIGSLARTFRATETRIIGPLVRLLDEREAEVSKEAADSLTKFACNDNYLHLDHSKAIISSGGAKHLVQLVYLGEPPVQYSALVLLSYIALHVPDSEELARVEVLGVLEWASKQLNVTQDETVAMLLQESKNRLELYQSRGSRGFQKLHQ 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02328 671 Gene3D - 412 652 IPR011989 -
Vifa4g02328 671 Gene3D - 146 309 IPR011989 -
Vifa4g02328 671 PANTHER ARMADILLO REPEAT ONLY 4 1 663 - -
Vifa4g02328 671 MobiDBLite consensus disorder prediction 368 404 - -
Vifa4g02328 671 SMART arm_5 219 259 IPR000225 GO:0005515
Vifa4g02328 671 SMART arm_5 572 612 IPR000225 GO:0005515
Vifa4g02328 671 SMART arm_5 494 529 IPR000225 GO:0005515
Vifa4g02328 671 SMART arm_5 177 218 IPR000225 GO:0005515
Vifa4g02328 671 SMART arm_5 438 478 IPR000225 GO:0005515
Vifa4g02328 671 FunFam Armadillo repeat only 4 2 122 - -
Vifa4g02328 671 SUPERFAMILY ARM repeat 153 629 IPR016024 -
Vifa4g02328 671 FunFam Armadillo repeat only 2 151 320 - -
Vifa4g02328 671 Gene3D - 3 122 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02328 Vifa-Chr4 700312166 700314181 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02328 147 281 U-box Gene Family AT3G46510 30.370 4.85e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02328 - - mtr:11440161 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02328 4 700312166 700314181 Vifa4g02328 4 700312166 700314181 ECH