Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02326 ATGGCGGAGGAGAGAATCTCAGGTGTGGTGCAATGGTTCAACAGTGGAAAAGGCTTTGGTTTCATCAAACCTGATGACGGCAGCGAGGATCTCTTCGTTCATCAATCATCCATCAGATCTGATGGATTCCGCACCCTCGCAGAAGGCGATCGTGTCGAATTCACTATCGCTACTGGCGATAATGACAAAACCAAGGCTGTTGATGTCACCGGTCCGAACGGCGCTCCTCTGCAGTCCAGGCAGGATTCGTACGGCGGTGGAGGCGGTCGTGGATTTGGTGGATTTAGGGGTTCTGAGAGACGTAACGGTGGAGGCGGTGCTGGATGTTACAACTGCGGTGACACTGGTCACATCGCGAGAGAGTGTAACAGGAGCAATAATTCTGGTGGTGGAGGCGCTGGCTGTTACAACTGCGGTGATACTGGCCACATCGCTAGGGATTGCAACCGGAACAATAATTCCGGCGGAGGAGGTGCTTGTTATACTTGCGGCTCTTTTGGTCATATTGCTAGGGATTGCACTCGAGGAGGCAATATCGGAGGCGGATTTGACCGTGGCAGTGGTGGAGCCACTTCTTGCTACAGATGTGGTGGAATTGGCCACATTGCCAGAGACTGTGCGACTCCCAGCGACAGGAGCGGCGGAGGTGGTGGTTGCTATAAATGCGGCGAGGTTGGTCACATCGCCAGGGATTGCAACATTGAAGGTGGGAGGTTCGATGGTGGCAACGGCGGCGGGAGATTTGGTGGTGGCAACAATGGAAGATTTGGTGCTGGCAATGGAGGAAACAACACTTGCTTCAATTGTGGGAAGCCGGGTCATTTTGCAAGGGAGTGCGTTGAGGCTTCTGTTTGA 855 0.5368 MAEERISGVVQWFNSGKGFGFIKPDDGSEDLFVHQSSIRSDGFRTLAEGDRVEFTIATGDNDKTKAVDVTGPNGAPLQSRQDSYGGGGGRGFGGFRGSERRNGGGGAGCYNCGDTGHIARECNRSNNSGGGGAGCYNCGDTGHIARDCNRNNNSGGGGACYTCGSFGHIARDCTRGGNIGGGFDRGSGGATSCYRCGGIGHIARDCATPSDRSGGGGGCYKCGEVGHIARDCNIEGGRFDGGNGGGRFGGGNNGRFGAGNGGNNTCFNCGKPGHFARECVEASV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02326 284 Pfam Zinc knuckle 159 174 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 Pfam Zinc knuckle 193 207 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 Pfam Zinc knuckle 134 148 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 Pfam Zinc knuckle 218 232 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 Pfam Zinc knuckle 264 279 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 Pfam Zinc knuckle 108 122 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 ProSiteProfiles Zinc finger CCHC-type profile. 219 232 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 Gene3D - 1 83 IPR012340 -
Vifa4g02326 284 SMART csp_8 7 72 IPR011129 GO:0003676
Vifa4g02326 284 PANTHER COLD SHOCK DOMAIN PROTEIN 2 153 208 - -
Vifa4g02326 284 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Vifa4g02326 284 ProSiteProfiles Zinc finger CCHC-type profile. 109 122 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 SUPERFAMILY Retrovirus zinc finger-like domains 186 234 IPR036875 GO:0003676|GO:0008270
Vifa4g02326 284 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Vifa4g02326 284 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Vifa4g02326 284 ProSiteProfiles Zinc finger CCHC-type profile. 160 175 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Vifa4g02326 284 ProSiteProfiles Zinc finger CCHC-type profile. 266 279 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 SUPERFAMILY Retrovirus zinc finger-like domains 100 152 IPR036875 GO:0003676|GO:0008270
Vifa4g02326 284 SUPERFAMILY Retrovirus zinc finger-like domains 152 206 IPR036875 GO:0003676|GO:0008270
Vifa4g02326 284 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Vifa4g02326 284 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Vifa4g02326 284 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Vifa4g02326 284 SUPERFAMILY Retrovirus zinc finger-like domains 252 279 IPR036875 GO:0003676|GO:0008270
Vifa4g02326 284 SMART c2hcfinal6 218 234 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 SMART c2hcfinal6 108 124 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 SMART c2hcfinal6 159 175 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 SMART c2hcfinal6 265 281 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 SMART c2hcfinal6 192 208 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 SMART c2hcfinal6 134 150 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 MobiDBLite consensus disorder prediction 65 99 - -
Vifa4g02326 284 Gene3D - 214 238 - -
Vifa4g02326 284 Gene3D - 97 130 - -
Vifa4g02326 284 Gene3D - 184 213 - -
Vifa4g02326 284 Gene3D - 131 153 - -
Vifa4g02326 284 Gene3D - 154 180 - -
Vifa4g02326 284 Gene3D - 257 283 - -
Vifa4g02326 284 ProSiteProfiles Zinc finger CCHC-type profile. 135 148 IPR001878 GO:0003676|GO:0008270
Vifa4g02326 284 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Vifa4g02326 284 ProSiteProfiles Zinc finger CCHC-type profile. 193 206 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02326 Vifa-Chr4 699166546 699167400 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vifa4g02326 CSD 3.3e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02326 K09250 - tpra:123881414 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02326 4 699166546 699167400 Vifa4g02326 4 699166546 699167400 ECH