Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02323 ATGCCTCCGATTCCGTCTATCATCTTCGCTTCGAGCCACAAAGTATTCTTCGACATCAGTATCGGTAATCCAGTTGGAAAACTAGTGGGTAAGATTGTCATCGGACTCTTTGGGGACGATGTCCCCCAAACTACCGAGAACTTCCGGGCCCTTTGCACTGGTGACAAGGGTTTTGGCTACAAGAACTCCACCTTCCATCGTGTCATCAGAGACTTCATGGTTCAAGGAGGAGATTTCGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGCACTTTCAAAGATGAGAATTTTAAACTCTCTCATACTGGACCCGGAACTGTTAGTATGGCTAATGCAGGTCCCAACACCAATGGGAGTCAGTTTTTCATATGCACCGTCAAGACGCAATGGCTTGATCAGAAACATGTTGTTTTTGGCCAAGTTGTTATCAGTGACTGTGGTGAGCTGCCAATTGCTTGA 468 0.4573 MPPIPSIIFASSHKVFFDISIGNPVGKLVGKIVIGLFGDDVPQTTENFRALCTGDKGFGYKNSTFHRVIRDFMVQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGTVSMANAGPNTNGSQFFICTVKTQWLDQKHVVFGQVVISDCGELPIA 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02323 155 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 60 77 IPR020892 GO:0003755|GO:0006457
Vifa4g02323 155 PIRSF Peptidylpro_ismrse 4 148 IPR024936 GO:0003755
Vifa4g02323 155 Gene3D - 9 151 IPR029000 -
Vifa4g02323 155 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 65 77 IPR002130 GO:0000413|GO:0003755
Vifa4g02323 155 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 36 51 IPR002130 GO:0000413|GO:0003755
Vifa4g02323 155 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 151 IPR002130 GO:0000413|GO:0003755
Vifa4g02323 155 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 123 135 IPR002130 GO:0000413|GO:0003755
Vifa4g02323 155 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 108 123 IPR002130 GO:0000413|GO:0003755
Vifa4g02323 155 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 16 155 IPR002130 GO:0000413|GO:0003755
Vifa4g02323 155 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 14 145 - -
Vifa4g02323 155 FunFam Peptidyl-prolyl cis-trans isomerase 8 151 - -
Vifa4g02323 155 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 29 145 IPR002130 GO:0000413|GO:0003755
Vifa4g02323 155 SUPERFAMILY Cyclophilin-like 8 151 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02323 Vifa-Chr4 698635939 698636645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02323 30 145 U-box Gene Family AT5G67530 52.991 1.67e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02323 K03768 - csav:115714308 265.003