Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02312 ATGTCTACCAAGTGCATGCACGTTTTTGATAGATTGCTTCTGTGTATTGCCACTTGTTGGAATAAAAATAGCACACCAAAAAGCAGAAGGAAATTCCACAGAGATGTCGAGAAAGAAGAAGAATTTCAGTTTGCAAGTACTCAATGTCTCTCATCCTATTACAGTGTCTTTGTCGTTCGCCTAGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTACTCACTATCCTAACATGGCATTTCACAAAGATTTATACAACAAAGTCTCTAAATAGTCTTGCTTATGACCTACGTTACGAACTTCTACAACGTCCGATCTTGAGGATGTGGAACATTTTGAACACTACTGCTGAAATCACAGCTGCTCAAGTTAAGTTGTCTGAGTATGTTATCAGAAGCCATAGTAACCTAGCCAATCAAGCAGAACAAGTTCAGATGTATGAATCCATGAGGGCTGTAACATGGGCGCTGTTTGCTAGTCGAAAAGCTCTCAACTCGATAACTGTCAAATATAACAACGATGATGAAATTTTGAATGATGAAGAAGTTCATAGTAACAAGTCTGTGATTTGGTACCGAGAACAGCTTGATCCTGTCAGCGGGGAGAAGATCGGAAAAGCAATAAAAGTTGCACCAGAAAACTCTATAAGTATAGCTGGCCTGTCCCAAGTACCTGACGGTGTAGCTTCGTGGAACGTTTCTGTGAACAAGTTTACGGATTCACCTTTACTCTCAGCAGCATTGCCAGTTTGGGATTCTTCTAATAAGAATATTGTTGCAGTTGTGGGAGTAACAACTGCCCTTTATAGTGTAGGGCAGCTAATGAAGGAACTAGTTGACAAGCACAGTGGTCATATATATTTGACCTCGCAAAAAGGCTATTTGCTCGCAACTTCCACAAATGATCCTCTACTGACAAATTCGAGAAAGAATCCTAAGCTTAAAATGGCTGTTGACTGTGATAATGAAGTAATAAGAGAGGGAGCTCAGTGGCTACAGAAAACCTATGGGAACGATTTCCCTCCAAGTCATGAAGTTCATGTAGAGAATGCCAGGCTAGGCCACCAGCAATATTACATCGATTCGTTCTACCTGAACTTGAAAAGGCTTCCTCTGGTGGGCGTAATAATCTTACCGAGGAAGCATATCATGGGGCAGGCAGATGAAAGGGCTTTCAAAACATTGGTTATTCTAATATCTGCATCATTGTGTATTATTGTGATTGGATGTTTTTGCATTTTGATATTAACAAATGGAGTATCAAAGGAAATGAACCTTAGAGCAGAATTAATCAGTCATCTCGAAGCAAGAAGAAAGGCCGAGGCATCAAGCAACTATAAAAGCCAATTTCTCGCAAATATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATTGGATTACTCGACATTCTTTTGTCTGATGATCATCTAACAAATGAACAATGTGCAACCGTTACTCAAATAAGAAAATGCTCAACCACATTACTCCGTTTACTCAATAACATCTTGGATCTAAGCAAGGTGGAATCTGGAAAACTTGTCTTGGAAGATGAAGAATTTGACTTGGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACACCGTAGAAATTATTTTAGACCTTTCTGACGATATGCCAAAGCTAGTTCGAGGAGATTCTGCTAGAGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATTAAGTTTACTCTATCTGGTCACATTATTCTGAGAGGATGGTGTGGAAACTCAAATTTTTATGGAGATAATGAAAGTTTCACCCCAGAGCCGATGAAATTGGTGTGTTCCCCGAAGACAAGGATGAAGCAACATGAAAACCATGCAAAGAAGACTTCTAATAGTGATAACAAAATGATAATTTGGTTTGAAGTCGATGACACGGGTTGTGGTATTGACCCGAGTAAATGGGATTCTGTGTTCGAGAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCACGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGATCCTTGGTTAATAAGATGGATGGAGAAATCAAGATTGTCAAAAAGGAGGGCCCAGGAACACTAATGCGATTATACCTGCATCTCAACGCGCCCGTGGATGCCGCAGAACAACATTGTCAAGTAGATTTTGCTAACAATGGCTTAGTGGTACTTCTTGCACTACATGGCAACATGAGTCGATTAATCACGTCTAAGTGGTTACAGACGAACGGCGTTGTCACTATGGAAGCATCTGAATGGAATGGATTAACACAAATTCTAAGAGAACTATTTCATGAAAGAAATTCAACTCATAATAACAATGACTTTGACGCACCTTATCCGGCTCCCGAGGGTCTGAAATCCAAATTGGTGAGCTTACAGGAATTGACAAACCCGACATTTGTCATTGCTGTTGATATTGATCTACTTGACTTGAGCACAGATATATGGAAGGAACAACTTAACTTCCTTCACAAGTACTACGGAAGAGCGAAATTCATTTGGTTACATAACCATGACTCGGCCAATACCATAAAGACGGAGCTTCGCAAGAAAGGGCGAATACTAACTGTCAACAAACCTCTTTACAAAGCAAAGATGGTTCATATTTTGGAAGCTGTCATAAATGAAAGAAATGTTGAGGCACAAAAGCAAAATATGGTTACTTCAAGATTCACAGTGAAAGAAGATGATTTGCATGAAAGTCTAGAGATTGATTATACTCACTGTGATGTTGGAAGCTCAGATGGCTCTGACGTATCTGAAATCGGTAGTTCTAATCTTGGTACTGTCAATGGAGATAAGCAAAGAAAAGAGGTAGTTAAATTCAATCAATCATCGATATACCGGAAAAGTAACAGCTTATTAGGATTAAGTAATGAATATACGGAACATAATAGTACTAGTAATGAAGCATTTATTTCAACAAGAGCAAAAGGTGATGATTCCGAAGGTAGTGAAACAAAAAATGTTAGTGGTTCAAGTAAAGGTATAAAAGGAAATAAGTCGCTCGAAGGTCTGAGGATATTGCTTGCAGAAGATACAGCAGTAATTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGTGCTAGTGTCGTTGCTGTAGGTGACGGGCGACAGGCGGTGGAAGCTCTAATTGGCACGATTGGTGTTGAAAATTGTATAAACACAAGAACATCAGAAACCGAAATTTTAAGTTTCCTTTCATATGACTTGATCCTTATGGATTGTCAGATGCCAAAGATGGACGGATATGAAGCAACAAAAGAAATAAGAAAATCAGAAGTGGGAACTGGATTCCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAGATGTTTGGAAGTCGGCATGGATGCTTATTTGACAAAGCCAATTGACTTTAAACTGATGGAATCTACTATTCTTTCACTCACAAGAGAGAATCTTTGA 3477 0.3943 MSTKCMHVFDRLLLCIATCWNKNSTPKSRRKFHRDVEKEEEFQFASTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNTTAEITAAQVKLSEYVIRSHSNLANQAEQVQMYESMRAVTWALFASRKALNSITVKYNNDDEILNDEEVHSNKSVIWYREQLDPVSGEKIGKAIKVAPENSISIAGLSQVPDGVASWNVSVNKFTDSPLLSAALPVWDSSNKNIVAVVGVTTALYSVGQLMKELVDKHSGHIYLTSQKGYLLATSTNDPLLTNSRKNPKLKMAVDCDNEVIREGAQWLQKTYGNDFPPSHEVHVENARLGHQQYYIDSFYLNLKRLPLVGVIILPRKHIMGQADERAFKTLVILISASLCIIVIGCFCILILTNGVSKEMNLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDHLTNEQCATVTQIRKCSTTLLRLLNNILDLSKVESGKLVLEDEEFDLGRELEGLVDMFSVQCINHTVEIILDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCGNSNFYGDNESFTPEPMKLVCSPKTRMKQHENHAKKTSNSDNKMIIWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRSLVNKMDGEIKIVKKEGPGTLMRLYLHLNAPVDAAEQHCQVDFANNGLVVLLALHGNMSRLITSKWLQTNGVVTMEASEWNGLTQILRELFHERNSTHNNNDFDAPYPAPEGLKSKLVSLQELTNPTFVIAVDIDLLDLSTDIWKEQLNFLHKYYGRAKFIWLHNHDSANTIKTELRKKGRILTVNKPLYKAKMVHILEAVINERNVEAQKQNMVTSRFTVKEDDLHESLEIDYTHCDVGSSDGSDVSEIGSSNLGTVNGDKQRKEVVKFNQSSIYRKSNSLLGLSNEYTEHNSTSNEAFISTRAKGDDSEGSETKNVSGSSKGIKGNKSLEGLRILLAEDTAVIQRVATIMLEKMGASVVAVGDGRQAVEALIGTIGVENCINTRTSETEILSFLSYDLILMDCQMPKMDGYEATKEIRKSEVGTGFHIPIVALTAHAMSCDEARCLEVGMDAYLTKPIDFKLMESTILSLTRENL 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02312 1158 SMART HKATPase_4 559 711 IPR003594 -
Vifa4g02312 1158 Pfam Response regulator receiver domain 1017 1147 IPR001789 GO:0000160
Vifa4g02312 1158 CDD REC_hyHK_CKI1_RcsC-like 1017 1150 - -
Vifa4g02312 1158 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 501 707 IPR036890 -
Vifa4g02312 1158 SMART HisKA_10 446 512 IPR003661 GO:0000155|GO:0007165
Vifa4g02312 1158 PANTHER TWO-COMPONENT HISTIDINE KINASE 35 718 - -
Vifa4g02312 1158 SMART REC_2 1015 1150 IPR001789 GO:0000160
Vifa4g02312 1158 FunFam Histidine kinase 1-like protein 434 513 - -
Vifa4g02312 1158 Pfam His Kinase A (phospho-acceptor) domain 447 512 IPR003661 GO:0000155|GO:0007165
Vifa4g02312 1158 ProSiteProfiles Histidine kinase domain profile. 453 711 IPR005467 -
Vifa4g02312 1158 Gene3D - 995 1152 - -
Vifa4g02312 1158 CDD HisKA 447 508 IPR003661 GO:0000155|GO:0007165
Vifa4g02312 1158 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 559 709 IPR003594 -
Vifa4g02312 1158 Gene3D - 514 712 IPR036890 -
Vifa4g02312 1158 SUPERFAMILY CheY-like 1013 1155 IPR011006 -
Vifa4g02312 1158 ProSiteProfiles Response regulatory domain profile. 1016 1154 IPR001789 GO:0000160
Vifa4g02312 1158 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 433 513 IPR036097 GO:0000155|GO:0007165
Vifa4g02312 1158 Gene3D - 434 513 - -
Vifa4g02312 1158 PRINTS Bacterial sensor protein C-terminal signature 695 708 IPR004358 GO:0016310|GO:0016772
Vifa4g02312 1158 PRINTS Bacterial sensor protein C-terminal signature 671 689 IPR004358 GO:0016310|GO:0016772
Vifa4g02312 1158 PRINTS Bacterial sensor protein C-terminal signature 654 664 IPR004358 GO:0016310|GO:0016772
Vifa4g02312 1158 PRINTS Bacterial sensor protein C-terminal signature 636 650 IPR004358 GO:0016310|GO:0016772
Vifa4g02312 1158 MobiDBLite consensus disorder prediction 985 1005 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02312 Vifa-Chr4 696437299 696442293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02312 8 1155 Histidine Kinase Gene Family AT2G17820 61.487 0.0 1423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa4g02312 HATPase_c 1.2e-21 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02312 - - gmx:100801970 1779.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02312 4 696437299 696442293 Vifa4g02312 4 696437299 696442293 ECH