Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02276 ATGTTTGAAGGTAGAAATGCATCTGCACATAACATGTTGCTAGGATTTATTGCAGGCATTTCAACAGTTATGGCATTAGCCTTATTGTTCATCCTCTTCTGGAAAAGGATTATTCCATTTCTTAAACAACGTAACACTTTGAAAGGAAAGGAGTATAGAAGCTTGAAATATGATAAGACATCTTTAAGGTGTTTTAAGATTGAGGAACTAGAGAGAGCTACACAAAATTTTAGCCAAGATTGCTTATTGGGTTCTGGTGCGTTTGGTAATGTCTACAAGGGAACTTTTGAGTTAGAAGGAATACTAGCCATAAAGAGACCTCATTCTGAATCATTCTTAAGTGTTGAGGAATTCAGAAATGAAGTTAGGCTTCTTTCAGCTGCAAAGCACAAGAATCTTGTTGGTCTGGTTGGATATTGTGAACAACCAGAACGAGATGGAGCAAAAGTACTCGTCTATGAATATGTATCAAATGGTTCACTCCTCGAATACATGATGGGAAACAGAAGGAGATGCTTAACTTGGAAGCAAAGAATAAACATAGCAATAGGAGCGGCAAAAGGCATTGCTTATTTGCATGAAGAGGTGAAGCCAAGCATAATTCATCGTGACATCAAACCAAGTAACATACTATTAGGGGAAGGTTTTGAGGCCAAAGTTTCAGATTTTGGTTTGGTAAAATCAGGGCCTACTGGTGATCAATCACATGTGAGTAGCCAAATCAAAGGGACACCAGGGTACCTTGATCCTGCATATTGTTCAAGCTGCCATTTGACAAAATTCAGTGATGTATATAGCTTCGGTGTTATACTTTTGCAACTTATTTCAGCTAGACCTGCTGTGGATAATGCTGAAAATCCAAGCAACCAACATATTATTGATTGGGCAAGGCCTAGCATAGAGAAAGGTAGCATTGAAGAAATCATGGATGCAAATCTATTTTGTGAAAGTGAGCCATGCAATATGAAAGTTATGTTAAAAATGGGACAACTTGGCATGAGATGTGTGGCCCAAGAACCAAAACATCGTCCCACAATGACCCAAGTTTGTAAAGAACTAGAGCAGGCCCTCTACACAGATGATAACTTCAGAAACAAGGATTCAGAAACTCTTGGATCAGTGGAACAGTATGATTTTTCACATAGCTTTGTGAGCATAGATGGTGTTGGATTTGAGAAATTTCATGTTGATATGGATAGCTTCTCTTTTAAAAGCACAAACTTAAGGTGCCTAGAAAATAATAGTATTAGTATTGACATTGACAAAAACAATTTGAGGAGGATACAATAG 1290 0.3775 MFEGRNASAHNMLLGFIAGISTVMALALLFILFWKRIIPFLKQRNTLKGKEYRSLKYDKTSLRCFKIEELERATQNFSQDCLLGSGAFGNVYKGTFELEGILAIKRPHSESFLSVEEFRNEVRLLSAAKHKNLVGLVGYCEQPERDGAKVLVYEYVSNGSLLEYMMGNRRRCLTWKQRINIAIGAAKGIAYLHEEVKPSIIHRDIKPSNILLGEGFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSCHLTKFSDVYSFGVILLQLISARPAVDNAENPSNQHIIDWARPSIEKGSIEEIMDANLFCESEPCNMKVMLKMGQLGMRCVAQEPKHRPTMTQVCKELEQALYTDDNFRNKDSETLGSVEQYDFSHSFVSIDGVGFEKFHVDMDSFSFKSTNLRCLENNSISIDIDKNNLRRIQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02276 429 Pfam Protein tyrosine and serine/threonine kinase 82 353 IPR001245 GO:0004672|GO:0006468
Vifa4g02276 429 SMART serkin_6 77 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02276 429 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 156 359 - -
Vifa4g02276 429 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
Vifa4g02276 429 Gene3D Transferase(Phosphotransferase) domain 1 156 378 - -
Vifa4g02276 429 CDD STKc_IRAK 83 355 - -
Vifa4g02276 429 SUPERFAMILY Protein kinase-like (PK-like) 54 354 IPR011009 -
Vifa4g02276 429 FunFam Putative LRR receptor-like serine/threonine-protein kinase 44 155 - -
Vifa4g02276 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vifa4g02276 429 Gene3D Phosphorylase Kinase; domain 1 40 155 - -
Vifa4g02276 429 ProSiteProfiles Protein kinase domain profile. 77 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02276 429 PANTHER OS01G0750732 PROTEIN 21 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02276 Vifa-Chr4 690909641 690911857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02276 12 356 Receptor kinase-like Gene Family AT5G48740 39.655 4.79e-74 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vifa4g02276 PK_Tyr_Ser-Thr 7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02276 - - gmx:106794267 653.284