Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02275 ATGTTTGAAGGTAGAAATGCATCTGCACATAACATGTTGCTAGGATTTATTGCAGGCATTTCAACAGTTATGGCATTAGCCTTATTGTTCATCCTCTTCTGGAAAAGGATTATTCCATTTCTTAAACAACGTAACACTTTGAAAGATGCAGGAAAGGAGTATAGAAGCTTGAAATATGATAAGACATCTTTAAGGTGTTTTAAGATTGAGGAACTAGAGAGAGCTACACAAAATTTTAGCCAAGATTGCTTATTGGGTTCTGGTGCGTTTGGTAATGTCTACAAGGGAACTTTTGAGTTAGAAGGAATACTAGCCATAAAGAGACCTCATTCTGAATCATTCTTAAGTGTTGAGGAATTCAGAAATGAAGTTAGGCTTCTTTCAGCTGCAAAGCACAAGAATCTTGTTGGTCTGGTTGGATATTGTGAACAACCAGAACGAGATGGAGCAAAAGTACTCGTCTATGAATATGTATCAAATGGTTCACTCCTCGAATACATGATGGGAAACAGAAGGAGATGCTTAACTTGGAAGCAAAGAATAAACATAGCAATAGGAGCGGCAAAAGGCATTGCTTATTTGCATGAAGAGGTGAAGCCAAGCATAATTCATCGTGACATCAAACCAAGTAACATACTATTAGGGGAAGGTTTTGAGGCCAAAGTTTCAGATTTTGGTTTGGTAAAATCAGGGCCTACTGGTGATCAATCACATGTGAGTAGCCAAATCAAAGGGACACCAGGGTACCTTGATCCTGCATATTGTTCAAGCTGCCATTTGACAAAATTCAGTGATGTATATAGCTTCGGTGTTATACTTTTGCAACTTATTTCAGCTAGACCTGCTGTGGATAATGCTGAAAATCCAAGCAACCAACATATTATTGATTGGGCAAGGCCTAGCATAGAGAAAGGTAGCATTGAAGAAATCATGGATGCAAATCTATTTTGTGAAAGTGAGCCATGCAATATGAAAGTTATGTTAAAAATGGGACAACTTGGCATGAGATGTGTGGCCCAAGAACCAAAACATCGTCCCACAATGACCCAAGTTTGTAAAGAACTAGAGCAGGCCCTCTACACAGATGATAACTTCAGAAACAAGGATTCAGAAACTCTTGGATCAGTGGAACAGTATGATTTTTCACATAGCTTTGTGAGCATAGATGGTGTTGGATTTGAGAAATTTCATGTTGATATGGATAGCTTCTCTTTTAAAAGCACAAACTTAAGGTGCCTAGAAAATAATAGTATTAGTATTGACATTGACAAAAACAATTTGAGGAGGATACAATAG 1296 0.3781 MFEGRNASAHNMLLGFIAGISTVMALALLFILFWKRIIPFLKQRNTLKDAGKEYRSLKYDKTSLRCFKIEELERATQNFSQDCLLGSGAFGNVYKGTFELEGILAIKRPHSESFLSVEEFRNEVRLLSAAKHKNLVGLVGYCEQPERDGAKVLVYEYVSNGSLLEYMMGNRRRCLTWKQRINIAIGAAKGIAYLHEEVKPSIIHRDIKPSNILLGEGFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSCHLTKFSDVYSFGVILLQLISARPAVDNAENPSNQHIIDWARPSIEKGSIEEIMDANLFCESEPCNMKVMLKMGQLGMRCVAQEPKHRPTMTQVCKELEQALYTDDNFRNKDSETLGSVEQYDFSHSFVSIDGVGFEKFHVDMDSFSFKSTNLRCLENNSISIDIDKNNLRRIQ 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02275 431 PANTHER OS01G0750732 PROTEIN 20 367 - -
Vifa4g02275 431 Pfam Protein tyrosine and serine/threonine kinase 84 355 IPR001245 GO:0004672|GO:0006468
Vifa4g02275 431 ProSiteProfiles Protein kinase domain profile. 79 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02275 431 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Vifa4g02275 431 Gene3D Phosphorylase Kinase; domain 1 42 157 - -
Vifa4g02275 431 SMART serkin_6 79 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02275 431 SUPERFAMILY Protein kinase-like (PK-like) 57 356 IPR011009 -
Vifa4g02275 431 Gene3D Transferase(Phosphotransferase) domain 1 158 380 - -
Vifa4g02275 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Vifa4g02275 431 FunFam Putative LRR receptor-like serine/threonine-protein kinase 44 157 - -
Vifa4g02275 431 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 158 361 - -
Vifa4g02275 431 CDD STKc_IRAK 85 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02275 Vifa-Chr4 690909641 690911857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02275 12 358 Receptor kinase-like Gene Family AT5G48740 39.542 1.46e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vifa4g02275 PK_Tyr_Ser-Thr 7.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02275 - - gmx:106794267 648.277