Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02270 ATGGCCGAATCACCCCCTAGAAGGATTTCAAAGTCCCCTTCACCGTCACCCTGGAAGGCTCAATCAAGATCACGATCGAGATCAAGGTCGAGGTCTGTGCCTAGACAAAGACCAAGATCTGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGGAGCCCGGAAAGGGCGGCCAATCCTACAAATCCTGGTAATACACTTTATGTTACTGGTCTATCTTCAAGGGTCACTGAGAGGGACCTAGAGGACCATTTTTCCAAGGAGGGAAAAGTTGCTTCATGCTTTCTTGTAGTGGAGCCACGTACCCGAATTTCTCGTGGTTTTGCTTTTGTTACTATGGATTCCCACGAGGATGCTGAGCGGTGTATCAAGCATCTCAACCAATCAGTTTTAGAGGGCCGCTATGTCACCGTAGAACGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCAGGGCACTATCTTGGGCTGAAGAATACTAGAGACTATGGCTCTCGTGGCGACAATCGTGATGACTATCGTGGCGGAAATCGCGGTGACTATCGTGGTGACTATCGTGGCGACAGTCGTGGTGACTATCGTGGCGATAGTCGTGGTGAGTTTCGTGGCAGCAGTCGTGGTGACTTTCGTGGCGATGGTCGTGGTGACTTTCGGGGCGACAATCGTGGTGACCGGGGAAGGAATTACAGTGGTTCTGGTCGTGGTGATTATCCACATCGAAGATCTCCAAGGCGTTCACCATACCACGGAGGCCCAGATCATTCACCACAGCGCTCACCCTATGTTGGGAGGTCTAGGAGGCAGAGATCAAGGTCTATTCCCCATTCTCCTTATAGCCCAGACAGGAGGTATGCTGGTGGATCTAGGTGA 867 0.5167 MAESPPRRISKSPSPSPWKAQSRSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPERAANPTNPGNTLYVTGLSSRVTERDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIKHLNQSVLEGRYVTVERSRRKRARTPTPGHYLGLKNTRDYGSRGDNRDDYRGGNRGDYRGDYRGDSRGDYRGDSRGEFRGSSRGDFRGDGRGDFRGDNRGDRGRNYSGSGRGDYPHRRSPRRSPYHGGPDHSPQRSPYVGRSRRQRSRSIPHSPYSPDRRYAGGSR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02270 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 135 IPR000504 GO:0003723
Vifa4g02270 288 SMART rrm1_1 65 138 IPR000504 GO:0003723
Vifa4g02270 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 142 IPR000504 GO:0003723
Vifa4g02270 288 CDD RRM_SF 66 138 - -
Vifa4g02270 288 Gene3D - 8 148 IPR012677 -
Vifa4g02270 288 SUPERFAMILY RNA-binding domain, RBD 19 140 IPR035979 GO:0003676
Vifa4g02270 288 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 49 276 - -
Vifa4g02270 288 MobiDBLite consensus disorder prediction 162 228 - -
Vifa4g02270 288 MobiDBLite consensus disorder prediction 34 52 - -
Vifa4g02270 288 MobiDBLite consensus disorder prediction 53 68 - -
Vifa4g02270 288 MobiDBLite consensus disorder prediction 1 68 - -
Vifa4g02270 288 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 148 - -
Vifa4g02270 288 MobiDBLite consensus disorder prediction 139 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02270 Vifa-Chr4 690009583 690012257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02270 61 126 Eukaryotic Initiation Factors Gene Family AT3G11400 40.909 8.29e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02270 K12897 - vvi:109122082 234.572