LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g02268	ATGATTTTCAATTCTTCTAAGTATATAACTTACTCATTTCCAGAATCACTTTTACCAAACGATGCATCACCCGAATGGAACAACAAAGCAGACAATGCATGGCAACTAACAGCAGCAACATTAGTGGGCCTTCAAAGTGTGCCTGGACTTGTCATACTTTACGGCAGCATGGTTAAGAAAAAATGGGCCGTAAATTCCGCCTTCATGGGCCTATATGCATTTTCTGCCGTGTTAGTTTGTTGGGTTTTATGGGCCCATGAAATGGCATTTGGGAACAAGCTTTTGCCTTTTGTTGGAAAGCCCAGTTTTGCATTGAATGAGAAGTTTCTACTTTCAAAGGCATCACCAACATATTATTTACCAATGGCTGACTTTGTTTTTTACCAATTTGCTTTTGCTGCAATTACTCTTGTGTTGCTTGCAGGGTCACTGCTTGGGAGAATGAATTTTTATGCATGGATGTTGTTTGTTCCTATGTGGCTTACATTGTCTTACACTGTTGGTGCTTTTACTATATGGGGGAATGGCTTTCTTGAGGGAAAAATAATTGATTATGCTGGGGGGTTTGTTATTCACCTATCCTCTGGTGTTGCTGGTTTCACTGCTGCTTATTGGGTTGGTCCAAGAAGTTCAAATGATAGGAAAAATTTTCCACCAAATAACATAATTCACATGCTTGGAGGTGCAGGGTTCTTATGGATGGGTTGGACAGGTTTTAATGGTGGTGCATCATTTCAGGTTGGAGAGATTACATCCTTGGCAATATTCAACACTCATTTGTGCACTGCCACAAGCATACTTGTTTGGCTTTCTCTAGATATGCTAGTATACAAGAAAGGCTCATTGATAGGTTCTGTCCAAGGAATGATCACTGGTCTAGTTTGTATCACACCAGGTGCAGGATTGGTGGATCCATGGGCTGCAATATTGATGGGAGCTTTATCTGGTTCAATTCCATGGTACACAATGATGGTATTGCATAAAAGGTCATCATTTTTTCAAAGTGTAGATGATACATTAGGAGTCTTTCACACTCATGCAGTGGCTGGTATTCTTGGTGGGATCCTTTCTGGTGTCTTTGCTAAACCCAATCTTTTGAAGATGCTCTATGGGCCTAAAACTTCTTATGGACCTGGCTTATTCTACAGTTATTTTGATGGTAATGTGAGCCAAGGAATCAAGCAAATGTTGTACCAATTACTAGGAGCATTTTTTATCACTCTCTGGAATGTTGTTATTACTAGTCTCGTTTGTATTATTGTAAGTCTCATTATGGATCTTCGAATGCAAGAGGAAGATCTTGAAGTTGGTGATGATGCTGCTCATGGAGAAGAAGCTTATGTTTTATGGGGTGATGGAGAAAAAAGGTCACTTCCTCTTCGTATACATATAAATTCTCCAACAATTATTTCTATTTCTCACCAAAGACATTCAATTCCTATCAATAAAATTGATGGATAA	1461	0.3915	MIFNSSKYITYSFPESLLPNDASPEWNNKADNAWQLTAATLVGLQSVPGLVILYGSMVKKKWAVNSAFMGLYAFSAVLVCWVLWAHEMAFGNKLLPFVGKPSFALNEKFLLSKASPTYYLPMADFVFYQFAFAAITLVLLAGSLLGRMNFYAWMLFVPMWLTLSYTVGAFTIWGNGFLEGKIIDYAGGFVIHLSSGVAGFTAAYWVGPRSSNDRKNFPPNNIIHMLGGAGFLWMGWTGFNGGASFQVGEITSLAIFNTHLCTATSILVWLSLDMLVYKKGSLIGSVQGMITGLVCITPGAGLVDPWAAILMGALSGSIPWYTMMVLHKRSSFFQSVDDTLGVFHTHAVAGILGGILSGVFAKPNLLKMLYGPKTSYGPGLFYSYFDGNVSQGIKQMLYQLLGAFFITLWNVVITSLVCIIVSLIMDLRMQEEDLEVGDDAAHGEEAYVLWGDGEKRSLPLRIHINSPTIISISHQRHSIPINKIDG	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g02268	486	Gene3D	Ammonium transporter AmtB like domains	15	450	IPR029020	-
	Vifa4g02268	486	Pfam	Ammonium Transporter Family	33	447	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Vifa4g02268	486	PRINTS	Rhesus blood group protein signature	223	241	IPR002229	GO:0005886
	Vifa4g02268	486	PRINTS	Rhesus blood group protein signature	129	145	IPR002229	GO:0005886
	Vifa4g02268	486	PRINTS	Rhesus blood group protein signature	347	363	IPR002229	GO:0005886
	Vifa4g02268	486	PRINTS	Rhesus blood group protein signature	254	276	IPR002229	GO:0005886
	Vifa4g02268	486	SUPERFAMILY	Ammonium transporter	26	429	-	-
	Vifa4g02268	486	PANTHER	AMMONIUM TRANSPORTER MEP2	17	456	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Vifa4g02268	486	FunFam	Ammonium transporter	16	450	-	-
	Vifa4g02268	486	ProSitePatterns	Ammonium transporters signature.	184	209	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Vifa4g02268	486	NCBIfam	ammonium transporter	31	447	IPR001905	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g02268	Vifa-Chr4	689795354	689797261	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g02268	122	455	Inorganic Solute Cotransporters	AT2G38290	57.910	6.30e-135	392

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g02268	K03320		-	gmx:100815876	788.489