Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02232 ATGGTTATTACTTCTGATGAGAACAAATCCAATGCAGTCGTGCCCAGAAATTGTCAAGGTGGTGGAAGAAATGCTGGGCAGAATAGGAGGACTCTGAGTGTGATTAATCAGAATCTTGTGCAGGGTCGACCTTACCCTTGTGTTGTCAACAAGAGGGCTTTGGTTTCTGATAAACATGAGATTTGTGAAAAGAAACAGGCTGATCTGGGACATCGACCCATCACAAGGAGGTTTGCTGCGAAAATTGCTGGTTCACAGCAGCAATCTCATGCTGAGAAACCTAAAAATTCAAATCCATTGAATTCAAAATCCAATGTGTTTGGAAAAGCCATTGCTGTTGATGATGAACACAAGACACCAGCGGATCAACAACCTGAGCCGATGACTTTAGAGCATACTGAACCGATGCACAGTGATTCACATGAGATGGAAGAGGTTGAGATGGAGGATATCGATAGAGAGGGGGTTTTGGACATTGATGGCTGTGATGCAAATAATGCTCTTGCTGTTGTGGAATATATCGAAGATCTTCACTCTTACTACAGAAAAGTTGAGTGCATTGGCTGTGTTTCACCAAACTACATGCAAGACCAAGCTGACCTTAACGAGAGAATGAGGGCTATACTAGTTGACTGGCTTATTGAGGTGCATGACAAATTTGACCTCATTCAAGAGACATTGTTTCTTACAATTAATCTCATAGACAGATTCTTGGCAAAGCAAAATGTCGTAAGAAAGAAACTTCAGCTGGTTGGTCTTGTTGCCATGCTTTTGGCCTGCAAATATGAGGAAGTCTCCGTCCCTGTCGTCTCGGATCTAATCCATATCTCTGACAAAGCTTACTCAAGGAAGGAACTTCTCCAAATGGAGAAGCTGATGCTCAACACGCTGCAGTATAACATGTCTCTACCAACTGCATATGTTTTCATGAGAAGGTTTCTCAAGGCTGCTCAGGCTAACAAAAAACTTGAGATGGTAGCTTTTTTCTTGGTAGAACTATCTCTGGTGGATTATGGAATGCTGAAGTTTCCACCATCCTTGGTGGCTGCTGCCGCGGTCTACACAGCGCAATGCACCATCAGCGGTTTCAAACACTGGAACAAAACGTGTGAATGGCACACCAACTACTCAGAAGATCAGCTATCAGAGTGCGCTAAGATGATGGTTGGATTACACCAGAAAGCCGGGACAGGAAAGCTTACAGGAGCACATAGGAAGTATTGCTCGGCAAAATTTACCTTCGCTGCAAAATGCGAACCAGCGTGTTTTCTTCTGCAGAATAACGAGTCTTGA 1293 0.4354 MVITSDENKSNAVVPRNCQGGGRNAGQNRRTLSVINQNLVQGRPYPCVVNKRALVSDKHEICEKKQADLGHRPITRRFAAKIAGSQQQSHAEKPKNSNPLNSKSNVFGKAIAVDDEHKTPADQQPEPMTLEHTEPMHSDSHEMEEVEMEDIDREGVLDIDGCDANNALAVVEYIEDLHSYYRKVECIGCVSPNYMQDQADLNERMRAILVDWLIEVHDKFDLIQETLFLTINLIDRFLAKQNVVRKKLQLVGLVAMLLACKYEEVSVPVVSDLIHISDKAYSRKELLQMEKLMLNTLQYNMSLPTAYVFMRRFLKAAQANKKLEMVAFFLVELSLVDYGMLKFPPSLVAAAAVYTAQCTISGFKHWNKTCEWHTNYSEDQLSECAKMMVGLHQKAGTGKLTGAHRKYCSAKFTFAAKCEPACFLLQNNES 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02232 430 PANTHER CYCLINS 128 399 IPR039361 -
Vifa4g02232 430 Pfam Cyclin, N-terminal domain 177 302 IPR006671 -
Vifa4g02232 430 SUPERFAMILY Cyclin-like 165 301 IPR036915 -
Vifa4g02232 430 SMART cyclin_7 211 295 IPR013763 -
Vifa4g02232 430 SMART cyclin_7 308 390 IPR013763 -
Vifa4g02232 430 Pfam Cyclin, C-terminal domain 304 420 IPR004367 -
Vifa4g02232 430 MobiDBLite consensus disorder prediction 1 27 - -
Vifa4g02232 430 MobiDBLite consensus disorder prediction 82 104 - -
Vifa4g02232 430 Gene3D - 190 302 - -
Vifa4g02232 430 FunFam G2/mitotic-specific cyclin-1 280 416 - -
Vifa4g02232 430 PIRSF Cyclin_A_B_D_E 2 430 IPR046965 GO:0016538|GO:0044772
Vifa4g02232 430 ProSitePatterns Cyclins signature. 206 237 IPR006671 -
Vifa4g02232 430 CDD CYCLIN_AtCycB-like_rpt1 154 299 - -
Vifa4g02232 430 SUPERFAMILY Cyclin-like 304 420 IPR036915 -
Vifa4g02232 430 SMART Cyclin_C_2 304 421 IPR004367 -
Vifa4g02232 430 CDD CYCLIN_AtCycB-like_rpt2 304 420 - -
Vifa4g02232 430 Gene3D - 176 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02232 Vifa-Chr4 681285270 681288538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02232 2 425 Core Cell Cycle Gene Families AT1G20610 55.505 2.37e-171 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02232 K21777 - gmx:100798068 620.157