Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02231 ATGGGAGGTGACGGTGCTGTTGCGGATTCCGCATCGGAATCGATGACCGGTGTTGAAGGTGTTAACATCAACGTTCGATGCTCCAACGGTTCAAAGTATTCCGTTCAAGTTTCTCTCGATTCGACGGTTGGATCGTTCAAGGATCTCATTGCGAGGAGCTGTGATATCCCCGCACAGCAACAACGGCTCATTTACAAGGGGAGGATATTGAAGGACGATCAAACGCTCCAAAGCTACGGTTTGGAGGCAGATCATGCTGTCCATTTGGTTCGTAGCTTTGCACCTGCCAACACGAGTGGTGGGGTTGGGACAAATAGTAGTGGCACCAATACCACAGCGACTGATGCCAGAGGTGCTGGAGCTCCTGATGTTGGGGGTGCAGGAGGGCTTGGTTTTGGAGCTTCACTGTTCCCTGGTTTAGGTACCAATGGTACTGGAGGGAATGGCTTATTCGGCGAGGGATTTCCAGATCTTGAACAAATGCAGCAACCATTTATTTCAAACCCCAATTTAATGAGAGAATTAATGAACACACCTGCTATGCAGAATCTAGTAAGTAATCCTGAGATAGTGCGGAATCTTATAATGAACAACCCACAGATGCAAGAGCTCATGGATCGGAACCCTGAGCTAGCTCACATACTTAATGATCCCAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAATCCTGAGATCATGCGTGAAATGATGAGAAATACTGACAGGGCTATGAGTAACATTGAATCATCTCCTGAGGGATTCAATATGCTAAGGCGCATGTATGAAAACGTTCAAGAACCATTTTTAAATGCCACTACAATGGCGGGTAATGCAGCAACTCGAGGTGGCCTAGCAAGAGACCAATCAACTAATCCCTCAACCACTAGTTCTGAAACAACTGCTGGCTCTACCATACCCAATGCTAACCCACTTCCTAATCCTTGGTCCTCTACCGGAACTGGAGCTCCTCAAAATAACACCAGAAGATCAACTACTGGCGTGGATGCTAGGCAGCAAGCACCTACTGGCTTAGGAGGGCTTGGCTTACCTGGCCTCGAGGGCATGCTGGGTGGCAGTGGTATGCCAGATCCTGCTTTATTAACCCAATTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTCTCCAACCCACAAACTTTGAGTCAGATTCTTGGTGCTGCTAATACTGAACAACGTGGAGGCATGCCTGATATGAATTCTCTTAGAGATGTGATGCAAAATCCAGAGTTCCTTCGTTTGTTTTCATCACCCGAGACATTGCAGCAACTCATGTCTTTCCAGCAAGCCCTTCTGTCTCAGCAAGGTCAGCAACAATCAACAAGGGAATCAGGTCAAACTGGTGGAGGGACTGGACCTTTTAACAACATGGGGCTGGAGATGTTATCCAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTATCTGTTCCAAATAGATCAAATGAGCCGCCAGAGCAATTGTATGCCACCCAGCTTACACAACTTCAAGAGATGGGGTTCTACGACACACAAGAGAACATTAGGGCTCTCGTTGCCACTTCAGGGAATGTTCATGCAGCCGTTGAACACCTTTTGGGGAGTTCTGGTCGGTAG 1623 0.4763 MGGDGAVADSASESMTGVEGVNINVRCSNGSKYSVQVSLDSTVGSFKDLIARSCDIPAQQQRLIYKGRILKDDQTLQSYGLEADHAVHLVRSFAPANTSGGVGTNSSGTNTTATDARGAGAPDVGGAGGLGFGASLFPGLGTNGTGGNGLFGEGFPDLEQMQQPFISNPNLMRELMNTPAMQNLVSNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAATRGGLARDQSTNPSTTSSETTAGSTIPNANPLPNPWSSTGTGAPQNNTRRSTTGVDARQQAPTGLGGLGLPGLEGMLGGSGMPDPALLTQLMQNPAISQMMQSMLSNPQTLSQILGAANTEQRGGMPDMNSLRDVMQNPEFLRLFSSPETLQQLMSFQQALLSQQGQQQSTRESGQTGGGTGPFNNMGLEMLSSMFGGLGAGSLSVPNRSNEPPEQLYATQLTQLQEMGFYDTQENIRALVATSGNVHAAVEHLLGSSGR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02231 540 CDD UBA_PLICs 498 536 - -
Vifa4g02231 540 SUPERFAMILY UBA-like 494 536 IPR009060 GO:0005515
Vifa4g02231 540 Pfam Ubiquitin family 23 92 IPR000626 GO:0005515
Vifa4g02231 540 Pfam UBA/TS-N domain 498 534 IPR015940 -
Vifa4g02231 540 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 492 537 IPR015940 -
Vifa4g02231 540 MobiDBLite consensus disorder prediction 98 120 - -
Vifa4g02231 540 FunFam Ubiquitin domain-containing protein DSK2b 195 251 - -
Vifa4g02231 540 SUPERFAMILY Ubiquitin-like 13 101 IPR029071 -
Vifa4g02231 540 FunFam Ubiquitin domain-containing protein DSK2b 481 539 - -
Vifa4g02231 540 Gene3D - 9 101 - -
Vifa4g02231 540 SMART uba_6 498 536 IPR015940 -
Vifa4g02231 540 SMART ubq_7 21 92 IPR000626 GO:0005515
Vifa4g02231 540 MobiDBLite consensus disorder prediction 280 350 - -
Vifa4g02231 540 Gene3D - 193 251 - -
Vifa4g02231 540 SMART CBM 341 394 IPR006636 -
Vifa4g02231 540 SMART CBM 144 185 IPR006636 -
Vifa4g02231 540 SMART CBM 399 434 IPR006636 -
Vifa4g02231 540 SMART CBM 198 237 IPR006636 -
Vifa4g02231 540 PANTHER UBIQUILIN 16 535 IPR015496 -
Vifa4g02231 540 MobiDBLite consensus disorder prediction 98 116 - -
Vifa4g02231 540 FunFam Ubiquitin domain-containing protein DSK2b 18 104 - -
Vifa4g02231 540 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Vifa4g02231 540 MobiDBLite consensus disorder prediction 442 463 - -
Vifa4g02231 540 CDD Ubl_Dsk2p_like 21 93 - -
Vifa4g02231 540 Gene3D - 480 539 - -
Vifa4g02231 540 MobiDBLite consensus disorder prediction 280 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02231 Vifa-Chr4 680415233 680420482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02231 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 1.65e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02231 K04523 - gmx:100776447 796.578