Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02227 ATGGGCCTCTGTCCTTCCTTTCTCTCTTCCACCTCTCCACCTCCCCAATCATCTTCTTCCTTCAACAGACCTCTTTCCTCAGGTTCAACAAGCACGGTTGGATTCTCTGCAACAACAAGCAGTGCTGGAAGGAGTCAAATCTCTGAAATAGCAAGTGGAAGCATTGGAAGTGTTACTGAAGGGTCTCTTCCTGTACCTTCTTCGCCAAATGGTCAAATTCTTGAAAGACCGAATTTGAAGTTTTTTAGCTACGCTGATATGAAATCTGCTACGAAAAATTTCAAACCAGATACATTACTTGGTGAAGGTGGTTTTGGAAAAGTTTATAAAGGTTGGTTGGATGAGAAAACTCTTACTCCTGCTAAAGCTGGTTCTGGAATGATTGTTGCTATAAAGAAATTGAACTCGGAAAGTACTCAAGGGTTTCAAGAATGGCAGTCAGAAGTCAACTTTTTAGGAAGGCTTTCACACCCAAACTTGGTGAAGCTATTGGGTTATTGTTGGGATGATGAAGAGCTTCTTCTTGTGTATGAGTTTATGCCAAAAGGAAGTTTGGAGAATCATCTCTTCAGAAGAAATCCAAACATTGAACCACTTTCTTGGAACACAAGAATCAAAATAGCTATTGGTGCAGCTCGAGGTTTAGCTTTCTTGCATGATTCGGACAAACAAGTCATATACCGAGATTTTAAAGCCTCAAATATACTCCTTGACGGGAGTTATAATGCAAAAATTTCAGATTTCGGATTAGCTAAATTGGGACCTTCTAGTGGACAATCACATGTAACTACAAGAGTCATGGGCACATATGGTTATGCTGCCCCCGAATACATTGCAACAGGGCACTTGTATGTGAAGAGTGACGTCTACGGTTTCGGGGTCGTCCTATTAGAAATCATAACAGCCATGAGAGCAATGGACACAAAAAGACCATCAGGGCAACAAAACCTAGTTGAATGGGTGAAACCTTTTCTCTCCAACAAGAAAAAACTGAAAGGCATAATGGATGCTAGAATAGAAGGACAATACTCACAAAAAGCAGCAATACAAGCAGCAGCACTTTCTCTAAAGTGTCTTGAAAGTGACCCTAAACAACGTCCTTCTATGAAAGATGTACTTGAGTCATTGGAAGCAATTGAAGGCATTGAAGTCAAATCCAAGGAATCCAAGAAAAATAGCTCTCATCAACCACCAGTTCATCAAGCTGCTAGGCACCAGAGAGTTGTGAGAGTATAG 1236 0.4086 MGLCPSFLSSTSPPPQSSSSFNRPLSSGSTSTVGFSATTSSAGRSQISEIASGSIGSVTEGSLPVPSSPNGQILERPNLKFFSYADMKSATKNFKPDTLLGEGGFGKVYKGWLDEKTLTPAKAGSGMIVAIKKLNSESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDEELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHDSDKQVIYRDFKASNILLDGSYNAKISDFGLAKLGPSSGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEIITAMRAMDTKRPSGQQNLVEWVKPFLSNKKKLKGIMDARIEGQYSQKAAIQAAALSLKCLESDPKQRPSMKDVLESLEAIEGIEVKSKESKKNSSHQPPVHQAARHQRVVRV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02227 411 SUPERFAMILY Protein kinase-like (PK-like) 72 377 IPR011009 -
Vifa4g02227 411 Gene3D Phosphorylase Kinase; domain 1 78 179 - -
Vifa4g02227 411 Pfam Protein tyrosine and serine/threonine kinase 98 376 IPR001245 GO:0004672|GO:0006468
Vifa4g02227 411 ProSiteProfiles Protein kinase domain profile. 94 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02227 411 ProSitePatterns Protein kinases ATP-binding region signature. 100 133 IPR017441 GO:0005524
Vifa4g02227 411 Gene3D Transferase(Phosphotransferase) domain 1 180 403 - -
Vifa4g02227 411 CDD STKc_IRAK 100 379 - -
Vifa4g02227 411 MobiDBLite consensus disorder prediction 1 44 - -
Vifa4g02227 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Vifa4g02227 411 FunFam Serine/threonine-protein kinase BIK1 62 179 - -
Vifa4g02227 411 FunFam Serine/threonine-protein kinase PBS1 180 395 - -
Vifa4g02227 411 MobiDBLite consensus disorder prediction 384 411 - -
Vifa4g02227 411 PANTHER OS01G0588500 PROTEIN-RELATED 37 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02227 Vifa-Chr4 678417346 678421565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02227 82 376 Glycoside Hydrolase AT3G07070 53.041 9.22e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa4g02227 PK_Tyr_Ser-Thr 8.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02227 - - gmx:100794193 632.869